Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- endoplasmic reticulum 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G174700.1 | Wheat | cytosol | 38.24 | 99.38 |
| TraesCS1B01G182700.1 | Wheat | cytosol | 38.24 | 99.38 |
| TraesCS1A01G166000.1 | Wheat | unclear | 38.24 | 99.38 |
| HORVU4Hr1G040980.1 | Barley | cytosol | 11.64 | 98.0 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 32.78 | 77.09 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 19.24 | 73.64 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 19.0 | 71.43 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 19.71 | 59.29 |
| Zm00001d032616_P001 | Maize | plastid | 21.62 | 58.33 |
| KXG38267 | Sorghum | cytosol | 21.85 | 57.5 |
| HORVU4Hr1G061980.1 | Barley | cytosol | 15.91 | 55.83 |
| HORVU7Hr1G113500.1 | Barley | cytosol, extracellular | 20.19 | 55.56 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 19.24 | 53.64 |
| Os10t0491801-00 | Rice | cytosol | 18.29 | 52.38 |
| HORVU7Hr1G103160.4 | Barley | cytosol | 21.85 | 50.83 |
| HORVU2Hr1G104410.26 | Barley | cytosol | 20.19 | 48.02 |
| HORVU7Hr1G029150.2 | Barley | cytosol | 20.67 | 47.8 |
| HORVU6Hr1G014910.1 | Barley | cytosol | 18.29 | 46.95 |
| HORVU4Hr1G061900.2 | Barley | nucleus, plastid | 20.9 | 46.07 |
| HORVU7Hr1G029100.1 | Barley | cytosol | 20.9 | 46.07 |
| HORVU7Hr1G029070.1 | Barley | cytosol | 20.19 | 45.21 |
| HORVU5Hr1G065170.1 | Barley | cytosol | 20.67 | 44.16 |
| HORVU5Hr1G056730.1 | Barley | cytosol, plastid | 16.86 | 42.26 |
| HORVU3Hr1G014150.2 | Barley | cytosol | 20.19 | 41.87 |
| HORVU3Hr1G014180.3 | Barley | cytosol | 20.19 | 41.87 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 26.6 | 41.79 |
| HORVU7Hr1G103380.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 15.2 | 41.29 |
| HORVU7Hr1G103550.4 | Barley | cytosol | 22.33 | 41.05 |
| HORVU6Hr1G026200.5 | Barley | cytosol | 22.57 | 37.85 |
| HORVU6Hr1G016150.3 | Barley | cytosol | 17.1 | 37.31 |
| HORVU3Hr1G111000.1 | Barley | cytosol | 13.54 | 37.25 |
| HORVU6Hr1G029050.1 | Barley | cytosol | 17.34 | 36.87 |
| HORVU6Hr1G014970.1 | Barley | plastid | 20.9 | 36.67 |
| HORVU0Hr1G038500.2 | Barley | cytosol | 19.95 | 34.71 |
| HORVU2Hr1G104440.1 | Barley | cytosol | 22.09 | 33.21 |
| HORVU7Hr1G102840.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 22.8 | 30.19 |
| HORVU5Hr1G019590.12 | Barley | extracellular | 22.8 | 29.18 |
| HORVU6Hr1G021700.4 | Barley | cytosol | 22.57 | 28.11 |
| HORVU3Hr1G110900.1 | Barley | cytosol | 14.49 | 27.11 |
| HORVU7Hr1G103330.1 | Barley | cytosol | 24.47 | 26.21 |
| HORVU6Hr1G026260.1 | Barley | cytosol, extracellular, plasma membrane | 25.89 | 23.39 |
| HORVU5Hr1G019600.6 | Barley | cytosol | 9.74 | 21.81 |
| HORVU3Hr1G110970.1 | Barley | cytosol, nucleus, plastid | 14.96 | 21.5 |
| HORVU7Hr1G103170.9 | Barley | cytosol, plasma membrane | 25.18 | 19.89 |
| HORVU6Hr1G020140.6 | Barley | cytosol | 9.03 | 19.79 |
| HORVU4Hr1G089720.1 | Barley | nucleus | 15.91 | 16.92 |
| HORVU6Hr1G026280.2 | Barley | plastid | 14.01 | 14.57 |
| HORVU7Hr1G107010.1 | Barley | cytosol | 4.28 | 11.76 |
| HORVU5Hr1G094230.2 | Barley | cytosol | 13.3 | 8.19 |
Protein Annotations
| MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | UniProt:A0A287FCB8 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU1Hr1G043930 | EnsemblPlants:HORVU1Hr1G043930.8 | InterPro:IPR000626 | InterPro:IPR038582 |
| PFAM:PF00240 | PFAM:PF01599 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 |
| PANTHER:PTHR10666:SF235 | InterPro:Ribosomal_S27a | InterPro:Ribosomal_zn-bd | InterPro:S27a-like_sf | SMART:SM00213 | SMART:SM01402 |
| SUPFAM:SSF54236 | SUPFAM:SSF57829 | TMHMM:TMhelix | UniParc:UPI000B47A480 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf |
| InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr1H:-:320541450..320544361
Molecular Weight (calculated)
45301.3 Da
IEP (calculated)
10.386
GRAVY (calculated)
-0.342
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MALSADANSC NAARFVVYTL SGQNSLKKAI SNSFSCALFS SSCIFRILFA ASFAFFVDGG FCLGLLLGAV STSSSALGFG SLEPKPRLLF LTRVSTGSNR
101: PCSCAPRPVP SFHPDFFSSC LEADVGGADG RHRFSHRANA APLPLPPLAA RFTGSLSPLL ASGVACAVRR FGFTCRSGPP SHGSSPCPAR SRVGSGPIDQ
201: SRPSRIGRPI KRARLRYNPT PQRPRHPTNQ ALKSQSAPPP PPQQVVNLGG LRRPANCGTM QIFVKTLTGK TITLEVESSD TIDNVKAKIQ DKEGIPPDQQ
301: RLIFAGKQLE DGRTLADYNI QKESTLHLVL RLRGGAKKRK KKTYSTPKKV KHEREKTPLA VLGYYRVDDA TGKVERLRKE CPNPDCGAGT FMAAHADRHA
401: CGKCGLTYAY AEAQGPEIDS D
101: PCSCAPRPVP SFHPDFFSSC LEADVGGADG RHRFSHRANA APLPLPPLAA RFTGSLSPLL ASGVACAVRR FGFTCRSGPP SHGSSPCPAR SRVGSGPIDQ
201: SRPSRIGRPI KRARLRYNPT PQRPRHPTNQ ALKSQSAPPP PPQQVVNLGG LRRPANCGTM QIFVKTLTGK TITLEVESSD TIDNVKAKIQ DKEGIPPDQQ
301: RLIFAGKQLE DGRTLADYNI QKESTLHLVL RLRGGAKKRK KKTYSTPKKV KHEREKTPLA VLGYYRVDDA TGKVERLRKE CPNPDCGAGT FMAAHADRHA
401: CGKCGLTYAY AEAQGPEIDS D
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
Arabidopsis Description
RPS27AAUbiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.