Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36170.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
| AT3G52590.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G040980.1 | Barley | cytosol | 43.75 | 98.0 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 86.61 | 88.18 |
| TraesCS4A01G306500.1 | Wheat | cytosol | 88.39 | 76.74 |
| TraesCS4B01G008400.1 | Wheat | cytosol | 88.39 | 76.74 |
| TraesCS4D01G006900.1 | Wheat | cytosol | 88.39 | 76.74 |
| GSMUA_Achr8P32920_001 | Banana | cytosol | 87.5 | 76.56 |
| PGSC0003DMT400047686 | Potato | cytosol | 87.5 | 76.56 |
| PGSC0003DMT400013958 | Potato | cytosol | 87.5 | 76.56 |
| EER96363 | Sorghum | cytosol | 87.5 | 75.97 |
| EER92591 | Sorghum | cytosol | 87.5 | 75.97 |
| Zm00001d005334_P001 | Maize | cytosol, plastid | 87.5 | 75.97 |
| VIT_08s0007g03030.t01 | Wine grape | cytosol | 86.61 | 75.78 |
| KRH67947 | Soybean | cytosol | 86.61 | 75.78 |
| KRH64348 | Soybean | cytosol, endoplasmic reticulum | 86.61 | 75.78 |
| KRH53585 | Soybean | cytosol | 86.61 | 75.78 |
| KRG96204 | Soybean | cytosol | 86.61 | 75.78 |
| AT3G52590.1 | Thale cress | cytosol | 85.71 | 75.0 |
| VIT_16s0098g01190.t01 | Wine grape | cytosol | 85.71 | 75.0 |
| AT2G36170.1 | Thale cress | cytosol | 85.71 | 75.0 |
| TraesCS4B01G233100.1 | Wheat | cytosol | 88.39 | 64.29 |
| KRG99541 | Soybean | cytosol | 63.39 | 63.96 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 79.46 | 63.57 |
| TraesCS4D01G234300.1 | Wheat | cytosol | 88.39 | 62.66 |
| TraesCS4A01G077000.1 | Wheat | cytosol | 88.39 | 62.66 |
| HORVU4Hr1G061980.1 | Barley | cytosol | 63.39 | 59.17 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 78.57 | 58.28 |
| HORVU7Hr1G113500.1 | Barley | cytosol, extracellular | 71.43 | 52.29 |
| HORVU2Hr1G104410.26 | Barley | cytosol | 78.57 | 49.72 |
| HORVU6Hr1G014910.1 | Barley | cytosol | 66.96 | 45.73 |
| HORVU7Hr1G103160.4 | Barley | cytosol | 73.21 | 45.3 |
| HORVU7Hr1G029150.2 | Barley | cytosol | 72.32 | 44.51 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 70.54 | 44.13 |
| HORVU4Hr1G061900.2 | Barley | nucleus, plastid | 75.0 | 43.98 |
| HORVU5Hr1G056730.1 | Barley | cytosol, plastid | 65.18 | 43.45 |
| HORVU7Hr1G029070.1 | Barley | cytosol | 71.43 | 42.55 |
| HORVU7Hr1G029100.1 | Barley | cytosol | 72.32 | 42.41 |
| HORVU5Hr1G065170.1 | Barley | cytosol | 72.32 | 41.12 |
| CDY00254 | Canola | cytosol | 38.39 | 40.57 |
| HORVU7Hr1G103380.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.36 | 40.0 |
| HORVU3Hr1G014150.2 | Barley | cytosol | 70.54 | 38.92 |
| HORVU3Hr1G014180.3 | Barley | cytosol | 70.54 | 38.92 |
| HORVU3Hr1G111000.1 | Barley | cytosol | 51.79 | 37.91 |
| HORVU7Hr1G103550.4 | Barley | cytosol | 74.11 | 36.24 |
| HORVU6Hr1G029050.1 | Barley | cytosol | 59.82 | 33.84 |
| HORVU6Hr1G014970.1 | Barley | plastid | 71.43 | 33.33 |
| HORVU6Hr1G026200.5 | Barley | cytosol | 74.11 | 33.07 |
| HORVU0Hr1G038500.2 | Barley | cytosol | 70.54 | 32.64 |
| HORVU2Hr1G104440.1 | Barley | cytosol | 80.36 | 32.14 |
| HORVU6Hr1G016150.3 | Barley | cytosol | 55.36 | 32.12 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 70.54 | 29.48 |
| HORVU7Hr1G102840.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 74.11 | 26.1 |
| HORVU5Hr1G019590.12 | Barley | extracellular | 75.89 | 25.84 |
| HORVU6Hr1G021700.4 | Barley | cytosol | 73.21 | 24.26 |
| HORVU3Hr1G110900.1 | Barley | cytosol | 48.21 | 24.0 |
| HORVU7Hr1G103330.1 | Barley | cytosol | 73.21 | 20.87 |
| HORVU5Hr1G019600.6 | Barley | cytosol | 33.93 | 20.21 |
| HORVU1Hr1G043930.8 | Barley | plastid | 71.43 | 19.0 |
| HORVU6Hr1G026260.1 | Barley | cytosol, extracellular, plasma membrane | 74.11 | 17.81 |
| HORVU3Hr1G110970.1 | Barley | cytosol, nucleus, plastid | 46.43 | 17.75 |
| HORVU6Hr1G020140.6 | Barley | cytosol | 29.46 | 17.19 |
| HORVU7Hr1G103170.9 | Barley | cytosol, plasma membrane | 73.21 | 15.38 |
| HORVU4Hr1G089720.1 | Barley | nucleus | 42.86 | 12.12 |
| HORVU6Hr1G026280.2 | Barley | plastid | 39.29 | 10.86 |
| HORVU5Hr1G094230.2 | Barley | cytosol | 37.5 | 6.14 |
| HORVU7Hr1G107010.1 | Barley | cytosol | 6.25 | 4.58 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | UniProt:A0A287PDT2 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU4Hr1G065100 | EnsemblPlants:HORVU4Hr1G065100.3 | InterPro:IPR000626 | InterPro:IPR038587 |
| InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 |
| PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI000B4679F8 |
| InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | : | : |
Description
No Description!
Coordinates
chrchr4H:-:543439817..543440440
Molecular Weight (calculated)
12813.7 Da
IEP (calculated)
10.319
GRAVY (calculated)
-0.431
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: AKMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK QLEDGRTLAD YNIQKESTLH LVLRLRGGII EPSLQALARK YNQEKMICRK
101: WLATQLFSRL RT
101: WLATQLFSRL RT
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.