Factsheet for Os05t0160200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23410.1	Os10t0114400-01	AT2G01950.1	19000166
AT2G47110.1	Os10t0114400-01	AT2G01950.1	19000166
AT3G62250.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0328400-01	Rice	nucleus	97.42	97.42
GSMUA_Achr8P22260_001	Banana	cytosol	96.77	95.54
GSMUA_Achr3P08430_001	Banana	cytosol	96.77	95.54
KRH11776	Soybean	nucleus	94.84	94.84
GSMUA_AchrUn_...	Banana	cytosol	95.48	94.27
VIT_17s0119g00050.t01	Wine grape	cytosol	94.84	94.23
Solyc12g098940.1.1	Tomato	cytosol, nucleus	94.84	94.23
PGSC0003DMT400011939	Potato	cytosol	94.84	94.23
KRH69588	Soybean	nucleus	94.19	94.19
KRH74571	Soybean	cytosol	94.19	94.19
VIT_08s0032g00900.t01	Wine grape	cytosol	94.19	93.59
PGSC0003DMT400013321	Potato	cytosol	94.19	93.59
KRH36782	Soybean	nucleus	93.55	93.55
Solyc01g056940.2.1	Tomato	nucleus	93.55	92.95
CDY25100	Canola	cytosol	93.55	92.36
AT2G47110.1	Thale cress	cytosol	93.55	92.36
CDY50916	Canola	cytosol	93.55	92.36
CDY66301	Canola	cytosol	93.55	92.36
CDY11410	Canola	cytosol	93.55	92.36
CDX93983	Canola	cytosol	93.55	92.36
CDX83344	Canola	cytosol	93.55	92.36
CDX76623	Canola	cytosol	93.55	92.36
CDX67885	Canola	cytosol	93.55	92.36
AT3G62250.1	Thale cress	cytosol	92.9	91.72
CDY25783	Canola	cytosol	90.97	90.38
CDY12472	Canola	cytosol	90.97	90.38
CDY44146	Canola	cytosol	90.97	90.38
AT1G23410.1	Thale cress	cytosol	90.32	89.74
CDY04715	Canola	cytosol	90.32	89.74
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	94.84	78.61
Solyc12g099030.1.1	Tomato	plastid	94.84	77.37
PGSC0003DMT400011737	Potato	cytosol	90.32	77.35
Os09t0452700-00	Rice	cytosol, extracellular, plasma membrane, plastid	54.84	60.71
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	55.48	56.21
Os09t0420800-01	Rice	cytosol, extracellular, plastid	55.48	56.21
Os10t0491801-00	Rice	cytosol	47.1	49.66
Os06t0673500-01	Rice	cytosol	58.06	43.06
Os07t0489500-00	Rice	cytosol	53.55	32.68
Os04t0628100-01	Rice	plasma membrane	61.29	24.23
Os02t0161900-01	Rice	extracellular, vacuole	61.94	19.83
Os06t0681400-01	Rice	cytosol	61.94	17.27

Protein Annotations

MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	EntrezGene:4337883	ProteinID:AAT93912.1	ProteinID:AAV43924.1
EMBL:AK119731	ProteinID:BAF16634.2	ProteinID:BAS92399.1	ProteinID:EEE62418.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0046872	InterPro:IPR000626	InterPro:IPR038582
EMBL:L31941	EnsemblPlantsGene:Os05g0160200	EnsemblPlants:Os05t0160200-01	UniProt:P51431	PFAM:PF00240	PFAM:PF01599
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF235	InterPro:Ribosomal_S27a
InterPro:Ribosomal_zn-bd	InterPro:S27a-like_sf	SMART:SM00213	SMART:SM01402	SUPFAM:SSF54236	SUPFAM:SSF57829
UniParc:UPI0000359716	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	RefSeq:XP_015639337.1
SEG:seg	:	:	:	:	:

Description

ribosomal protein-linked ubiquitin, Ubiquitin/ribosomal protein S27a, ubiquitin fused to CEP80 geneUbiquitin. (Os05t0160200-01)

Coordinates

chr5:+:3535342..3536076

Molecular Weight (calculated)

17683.6 Da

IEP (calculated)

10.458

GRAVY (calculated)

-0.757

Length

155 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDD ATGKVTRLRK ECPNNDCGAG TFMANHFDRH YCGKCGLTYV YNQKA

Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE

Arabidopsis Description

RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.