Factsheet for Os04t0628100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 1
cytosol 1
extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

plasma membrane: 18260611
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G293300.1	Wheat	plastid	76.28	98.03
TraesCS7B01G366700.1	Wheat	cytosol	37.76	96.73
TraesCS7D01G443100.1	Wheat	cytosol	56.38	96.51
TraesCS6D01G248600.1	Wheat	cytosol	37.76	96.1
TraesCS7B01G366600.1	Wheat	cytosol	38.01	95.51
TraesCS2A01G408500.1	Wheat	cytosol	55.1	94.32
CDY39163	Canola	cytosol	22.7	88.12
TraesCS6D01G125600.1	Wheat	cytosol	70.41	83.64
KXG29531	Sorghum	cytosol	94.64	81.18
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	30.87	79.08
Os09t0420800-01	Rice	cytosol, extracellular, plastid	30.87	79.08
Os02t0161900-01	Rice	extracellular, vacuole	94.9	76.86
Os06t0673500-01	Rice	cytosol	39.8	74.64
HORVU7Hr1G103170.9	Barley	cytosol, plasma membrane	95.41	70.17
Solyc11g005670.1.1	Tomato	cytosol, nucleus	94.64	69.48
Os06t0681400-01	Rice	cytosol	95.15	67.09
TraesCS7B01G354000.2	Wheat	cytosol	52.55	66.67
Os09t0452700-00	Rice	cytosol, extracellular, plasma membrane, plastid	22.45	62.86
Os05t0160200-01	Rice	nucleus	24.23	61.29
Os01t0328400-01	Rice	nucleus	23.98	60.65
KRH02499	Soybean	cytosol	49.49	50.92
PGSC0003DMT400037401	Potato	cytosol	49.49	50.65
Os10t0491801-00	Rice	cytosol	16.33	43.54
Os07t0489500-00	Rice	cytosol	23.98	37.01

Protein Annotations

MapMan:19.2.2.1.1	Gene3D:3.10.20.90	EntrezGene:4337080	ProteinID:BAF15871.1	ProteinID:BAS91137.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	InterPro:IPR000626	EnsemblPlantsGene:Os04g0628100	EnsemblPlants:Os04t0628100-01	PFAM:PF00240	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2	UniProt:Q0J9W6	SMART:SM00213
SUPFAM:SSF54236	UniParc:UPI0000DD92B3	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom

Description

RICE POLYUBIQUITINSimilar to Polyubiquitin. (Os04t0628100-01);Similar to Polyubiquitin. (Os04t0628100-02)

Coordinates

chr4:+:31962541..31965035

Molecular Weight (calculated)

43987.5 Da

IEP (calculated)

7.709

GRAVY (calculated)

-0.357

Length

392 amino acids

Sequence
(BLAST)

001: MLIPILSCLF QMQIFVKTLT GKTITLEVEF SDTIDNVKAK IQDKEGIPPD QQRLIFAGKQ LEDGRTLADY NIQKESTLHL VLRLRGGMQI FVKTLTGKTI
101: TLEVESSDTI DNVKAKIQDK EGIPPDQQRL IFAGKQLEDG RTLADYNIQK ESTLHLVLRL RGGMQIFVKT LTGKTITLEV ESSDTIDNVK AKIQDKEGIP
201: PDQQRLIFAG KQLEDGRTLA DYNIQKESTL HLVLRLRGGM QIFVKTLTGK TITLEVESSD TIDNVKAKIQ DKEGIPPDQQ RLIFAGKQLE DGRTLADYNI
301: QKESTLHLVL RLRGGMQIFV KTLTGKTITL EVESSDTIDN VKAKIQDKEG IPPDQQRLIF AGKQLEDGRT LADYNIQKES TLHLVLRLRG GL

Best Arabidopsis Sequence Match ( AT4G05320.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG F

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.