Factsheet for TraesCS6B01G293300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
plastid: 22160430
golgi: 23128297

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G366700.1	Wheat	cytosol	49.51	98.69
TraesCS6D01G248600.1	Wheat	cytosol	49.51	98.05
TraesCS7B01G366600.1	Wheat	cytosol	49.84	97.44
TraesCS7B01G366400.1	Wheat	cytosol	24.59	97.4
TraesCS6B01G115100.1	Wheat	cytosol	46.89	81.71
TraesCS7B01G413800.1	Wheat	cytosol	40.66	81.05
TraesCS5B01G222800.1	Wheat	cytosol	40.66	81.05
TraesCS6B01G176000.1	Wheat	cytosol	40.33	80.39
TraesCS7B01G366800.1	Wheat	cytosol	48.85	78.01
Os04t0628100-01	Rice	plasma membrane	98.03	76.28
CDY39163	Canola	cytosol	24.92	75.25
TraesCS6B01G164600.1	Wheat	cytosol	49.84	66.38
TraesCS7D01G443100.1	Wheat	cytosol	49.51	65.94
TraesCS4B01G008400.1	Wheat	cytosol	27.87	65.89
TraesCS6B01G164700.2	Wheat	cytosol	49.18	65.5
TraesCS6B01G148000.2	Wheat	cytosol	50.82	65.13
TraesCS3B01G567200.1	Wheat	mitochondrion	47.54	64.73
KXG29531	Sorghum	cytosol	96.72	64.55
TraesCS3B01G567300.1	Wheat	mitochondrion	45.9	64.22
TraesCS2A01G408500.1	Wheat	cytosol	47.87	63.76
TraesCS4B01G218100.1	Wheat	cytosol	27.54	63.64
TraesCS4B01G218000.1	Wheat	cytosol	26.89	62.12
TraesCS3B01G572400.1	Wheat	cytosol, mitochondrion	30.16	60.53
TraesCS5B01G260700.1	Wheat	cytosol	26.56	60.0
TraesCS7B01G390900.1	Wheat	cytosol	26.89	58.99
TraesCS1B01G241200.1	Wheat	cytosol	26.89	58.99
TraesCS7B01G390800.1	Wheat	cytosol	26.89	58.99
TraesCS6B01G176400.1	Wheat	cytosol	25.9	58.52
TraesCS2B01G480400.1	Wheat	cytosol	27.21	58.45
TraesCS2B01G480300.1	Wheat	cytosol	27.21	58.45
TraesCS1B01G130900.1	Wheat	cytosol	28.85	56.77
TraesCS1B01G425700.1	Wheat	cytosol	28.85	56.77
TraesCS5B01G524500.1	Wheat	cytosol	18.36	56.0
TraesCS6B01G110300.1	Wheat	cytosol	49.18	55.56
Solyc11g005670.1.1	Tomato	cytosol, nucleus	96.72	55.24
TraesCS4B01G233100.1	Wheat	cytosol	27.87	55.19
TraesCS3B01G569000.1	Wheat	mitochondrion	40.0	54.46
TraesCS7B01G354200.1	Wheat	cytosol	49.84	54.29
TraesCS7B01G044300.1	Wheat	cytosol	11.15	53.97
TraesCS1B01G182700.1	Wheat	cytosol	28.52	53.7
TraesCS2B01G480600.1	Wheat	cytosol	23.93	52.9
TraesCS2B01G480500.1	Wheat	cytosol	23.28	51.45
TraesCS3B01G567800.1	Wheat	mitochondrion	37.7	51.34
HORVU7Hr1G103330.1	Barley	cytosol	65.57	50.89
TraesCS3B01G568900.1	Wheat	mitochondrion	23.28	50.71
TraesCS7B01G354100.1	Wheat	cytosol	49.84	49.84
TraesCS2B01G426500.1	Wheat	cytosol	24.92	49.67
TraesCS6B01G164900.1	Wheat	cytosol	24.92	49.67
TraesCS7B01G367700.1	Wheat	cytosol	24.92	49.67
TraesCS5B01G080200.1	Wheat	cytosol	24.92	49.67
TraesCS6B01G140600.1	Wheat	cytosol	24.92	49.67
TraesCS7B01G381800.1	Wheat	cytosol	24.92	49.67
TraesCS5B01G187200.1	Wheat	cytosol	22.95	49.3
TraesCS3B01G569700.1	Wheat	cytosol	50.49	47.98
TraesCS3B01G568000.1	Wheat	cytosol	46.56	47.65
TraesCS3B01G567400.1	Wheat	cytosol	46.23	47.47
TraesCS3B01G043200.1	Wheat	cytosol	21.97	47.18
TraesCS3B01G567100.1	Wheat	nucleus	45.57	46.8
TraesCS5B01G524600.1	Wheat	cytosol	20.0	44.53
TraesCS7B01G354000.2	Wheat	cytosol	44.59	44.01
TraesCS3B01G061600.1	Wheat	cytosol	34.75	42.74
TraesCS7B01G367600.1	Wheat	cytosol	41.97	42.52
TraesCS5B01G524700.1	Wheat	cytosol	18.69	41.01
TraesCS6B01G012500.1	Wheat	cytosol	32.13	40.0
TraesCS2B01G107600.1	Wheat	cytosol	18.03	39.29
TraesCS2B01G107800.1	Wheat	cytosol	19.67	39.22
TraesCS7B01G004300.1	Wheat	cytosol	23.93	33.49
TraesCS4B01G387300.1	Wheat	cytosol	34.43	32.61
KRH02499	Soybean	cytosol	40.66	32.55
PGSC0003DMT400037401	Potato	cytosol	40.66	32.38
TraesCS7B01G486200.1	Wheat	cytosol	28.2	29.55
TraesCS4B01G389100.1	Wheat	endoplasmic reticulum	19.02	27.49
TraesCS1B01G325300.1	Wheat	cytosol	32.13	24.69
TraesCS5B01G386500.1	Wheat	nucleus	28.2	22.28
TraesCS5B01G387000.1	Wheat	cytosol	34.75	15.5
TraesCS5B01G386900.1	Wheat	cytosol	10.16	7.85

Protein Annotations

EnsemblPlants:TraesCS6B01G293300.1	EnsemblPlantsGene:TraesCS6B01G293300	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	PANTHER:PTHR45095
PANTHER:PTHR45095:SF2	PFAM:PF00240	PFscan:PS50053	PRINTS:PR00348	ScanProsite:PS00299	SMART:SM00213
SUPFAM:SSF54236	TIGR:cd01803	MapMan:19.2.2.1.1	:	:	:

Description

No Description!

Coordinates

chr6B:-:526797235..526798152

Molecular Weight (calculated)

34160.3 Da

IEP (calculated)

7.816

GRAVY (calculated)

-0.431

Length

305 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGL

Best Arabidopsis Sequence Match ( AT5G20620.1 )
(BLAST)

Arabidopsis Description

UBQ4Polyubiquitin 4 [Source:UniProtKB/Swiss-Prot;Acc:P0CH32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.