Factsheet for Solyc11g005670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G293300.1	Wheat	plastid	55.24	96.72
TraesCS7D01G443100.1	Wheat	cytosol	41.01	95.63
Os04t0628100-01	Rice	plasma membrane	69.48	94.64
TraesCS6D01G248600.1	Wheat	cytosol	26.97	93.51
TraesCS7B01G366700.1	Wheat	cytosol	26.78	93.46
TraesCS2A01G408500.1	Wheat	cytosol	40.07	93.45
TraesCS7B01G366600.1	Wheat	cytosol	26.97	92.31
CDY39163	Canola	cytosol	17.23	91.09
KRH02499	Soybean	cytosol	64.42	90.29
KXG29531	Sorghum	cytosol	71.16	83.15
Solyc10g006480.1.1	Tomato	cytosol, extracellular, nucleus, unclear	71.16	83.15
TraesCS6D01G125600.1	Wheat	cytosol	51.31	83.03
Solyc10g005560.2.1	Tomato	cytosol, nucleus	21.91	75.97
HORVU7Hr1G103170.9	Barley	cytosol, plasma membrane	70.41	70.54
PGSC0003DMT400037401	Potato	cytosol	50.0	69.71
Solyc08g083120.2.1	Tomato	cytosol, nucleus	16.1	67.19
Solyc03g082570.2.1	Tomato	cytosol	16.1	67.19
Solyc01g096290.2.1	Tomato	cytosol	16.1	67.19
TraesCS7B01G354000.2	Wheat	cytosol	38.58	66.67
Solyc07g064130.1.1	Tomato	nucleus	56.74	66.3
Solyc11g005640.1.1	Tomato	cytosol	27.15	65.32
Solyc08g008590.2.1	Tomato	cytosol, nucleus	15.92	62.5
Solyc11g005650.1.1	Tomato	plasma membrane	12.73	60.18
Solyc12g098940.1.1	Tomato	cytosol, nucleus	17.42	59.62
Solyc01g056940.2.1	Tomato	nucleus	17.04	58.33
Solyc12g099030.1.1	Tomato	plastid	17.98	50.53
Solyc06g053210.2.1	Tomato	cytosol	16.67	47.34
Solyc03g005610.2.1	Tomato	cytosol	22.66	30.1

Protein Annotations

EnsemblPlants:Solyc11g005670.1.1	EnsemblPlantsGene:Solyc11g005670.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	PANTHER:PTHR10666
PANTHER:PTHR10666:SF240	PFAM:PF00240	PFscan:PS50053	PRINTS:PR00348	ScanProsite:PS00299	SMART:SM00213
SUPFAM:SSF54236	UniParc:UPI0002769906	UniProt:K4D4I0	MapMan:19.2.2.1.1	:	:

Description

No Description!

Coordinates

chr11:+:496333..497937

Molecular Weight (calculated)

59797.3 Da

IEP (calculated)

7.265

GRAVY (calculated)

-0.443

Length

534 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI
501: FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGDL

Best Arabidopsis Sequence Match ( AT4G05320.2 )
(BLAST)

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.