Factsheet for Solyc03g005610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033485	Potato	cytosol	32.34	62.8
GSMUA_Achr9P30160_001	Banana	cytosol	7.71	40.26
TraesCS7A01G105500.1	Wheat	cytosol	10.7	31.39
TraesCS7A01G105400.1	Wheat	cytosol	11.19	31.03
Solyc10g005560.2.1	Tomato	cytosol, nucleus	11.44	29.87
TraesCS7B01G004300.1	Wheat	cytosol	14.93	27.52
Solyc08g083120.2.1	Tomato	cytosol, nucleus	8.71	27.34
Solyc01g096290.2.1	Tomato	cytosol	8.71	27.34
Solyc03g082570.2.1	Tomato	cytosol	8.71	27.34
KRH38035	Soybean	cytosol	8.71	26.92
Solyc08g008590.2.1	Tomato	cytosol, nucleus	8.71	25.74
Solyc12g098940.1.1	Tomato	cytosol, nucleus	9.7	25.0
TraesCSU01G094900.1	Wheat	cytosol	9.2	24.83
Solyc01g056940.2.1	Tomato	nucleus	9.45	24.36
Solyc11g005640.1.1	Tomato	cytosol	13.18	23.87
Solyc11g005650.1.1	Tomato	plasma membrane	6.47	23.01
Solyc11g005670.1.1	Tomato	cytosol, nucleus	30.1	22.66
TraesCS3B01G061600.1	Wheat	cytosol	13.93	22.58
OQU90737	Sorghum	cytosol	9.45	21.71
TraesCSU01G095200.1	Wheat	cytosol	7.71	21.68
Solyc12g099030.1.1	Tomato	plastid	10.2	21.58
Solyc10g006480.1.1	Tomato	cytosol, extracellular, nucleus, unclear	23.63	20.79
Solyc07g064130.1.1	Tomato	nucleus	23.63	20.79
Solyc06g053210.2.1	Tomato	cytosol	8.96	19.15
HORVU5Hr1G019600.6	Barley	cytosol	8.71	18.62
TraesCS7D01G100100.1	Wheat	cytosol	10.7	17.92
TraesCSU01G095100.1	Wheat	cytosol	10.7	17.84
HORVU6Hr1G020140.6	Barley	cytosol	7.21	15.1
HORVU5Hr1G094230.2	Barley	cytosol	19.15	11.26

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
UniProt:K4BDY5	PFAM:PF00240	PRINTS:PR00348	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF239
SMART:SM00213	SUPFAM:SSF54236	EnsemblPlantsGene:Solyc03g005610.2	EnsemblPlants:Solyc03g005610.2.1	UniParc:UPI000276925E	InterPro:Ubiquitin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	:	:	:	:

Description

No Description!

Coordinates

chr3:-:443688..446186

Molecular Weight (calculated)

46502.8 Da

IEP (calculated)

9.182

GRAVY (calculated)

-0.252

Length

402 amino acids

Sequence
(BLAST)

001: MEQSMRNMRI NEEEKEMTIY LKINKTVALR VKESDSIGNI KSLLHDNEGI PECLQHLFSK GVELADELKL VDYGITTNSF LHASVDNSIS RIFFVKRPYA
101: IDAITVCSRI CDTIQDVKYR IEASEGVEST EFSLIHDGKF LDDDKTFAFY KIDSGSMLHM VLYPRDKFLI SIVMPWEKIV KIEVKAALTV REVKRSLESK
201: VRWPKNSMYL FSGNQKLEDS KTLYQCDINE ESIIQVKYRT IQIFINTGDG STTLDVHRHE LIRNVKLMIL KKLKIPVHLQ KLFYGGKCLF DHRDLASYNV
301: KKESNIMFDI RLPPPANIYE RYEPYFTSSQ PVSNMRCHHQ TSLRKIKGVV SRFTSVAHLK TLIKYDLKVN VKELYLRGKL LSDLCCLGKY GITKKTELGI
401: LC

Best Arabidopsis Sequence Match ( AT4G02890.3 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGF

Arabidopsis Description

UBQ14Polyubiquitin 14 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.