Factsheet for Solyc10g006480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22892874
nucleus: 25464976
unclear: 26455813

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29530	Sorghum	cytosol	83.15	99.74
Solyc07g064130.1.1	Tomato	nucleus	82.93	82.93
Solyc10g005560.2.1	Tomato	cytosol, nucleus	27.13	80.52
Solyc11g005670.1.1	Tomato	cytosol, nucleus	83.15	71.16
Solyc01g096290.2.1	Tomato	cytosol	19.69	70.31
Solyc03g082570.2.1	Tomato	cytosol	19.69	70.31
Solyc08g083120.2.1	Tomato	cytosol, nucleus	19.69	70.31
Solyc11g005640.1.1	Tomato	cytosol	33.26	68.47
Solyc08g008590.2.1	Tomato	cytosol, nucleus	19.47	65.44
Solyc12g098940.1.1	Tomato	cytosol, nucleus	21.01	61.54
Solyc01g056940.2.1	Tomato	nucleus	20.57	60.26
Solyc11g005650.1.1	Tomato	plasma membrane	13.35	53.98
Solyc12g099030.1.1	Tomato	plastid	21.01	50.53
Solyc06g053210.2.1	Tomato	cytosol	19.26	46.81
Solyc03g005610.2.1	Tomato	cytosol	20.79	23.63

Protein Annotations

EnsemblPlants:Solyc10g006480.1.1	EnsemblPlantsGene:Solyc10g006480.1	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	PANTHER:PTHR45095
PANTHER:PTHR45095:SF2	PFAM:PF00240	PFscan:PS50053	PRINTS:PR00348	ScanProsite:PS00299	SMART:SM00213
SUPFAM:SSF54236	UniParc:UPI00000AC751	UniProt:K4CXH9	MapMan:19.2.2.1.1	:	:

Description

Polyubiquitin 14 [Source:Projected from Arabidopsis thaliana (AT4G05320) UniProtKB/Swiss-Prot;Acc:Q3E7T8]

Coordinates

chr10:-:1071346..1072719

Molecular Weight (calculated)

51208.9 Da

IEP (calculated)

7.882

GRAVY (calculated)

-0.438

Length

457 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF

Best Arabidopsis Sequence Match ( AT4G05320.2 )
(BLAST)

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.