Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
plastid: 26371478 |
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc04g008430.1.1 | |
Solyc06g075780.1.1 | |
Solyc11g073060.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400013321 | Potato | cytosol | 99.36 | 99.36 |
PGSC0003DMT400011939 | Potato | cytosol | 98.08 | 98.08 |
Solyc12g098940.1.1 | Tomato | cytosol, nucleus | 98.08 | 98.08 |
VIT_17s0119g00050.t01 | Wine grape | cytosol | 97.44 | 97.44 |
GSMUA_Achr8P22260_001 | Banana | cytosol | 96.15 | 95.54 |
GSMUA_Achr3P08430_001 | Banana | cytosol | 96.15 | 95.54 |
KRH69588 | Soybean | nucleus | 94.87 | 95.48 |
KRH11776 | Soybean | nucleus | 94.87 | 95.48 |
KRH74571 | Soybean | cytosol | 94.87 | 95.48 |
GSMUA_AchrUn_... | Banana | cytosol | 94.87 | 94.27 |
TraesCS1B01G425700.1 | Wheat | cytosol | 93.59 | 94.19 |
KRH36782 | Soybean | nucleus | 93.59 | 94.19 |
TraesCS1A01G397400.1 | Wheat | cytosol | 93.59 | 94.19 |
TraesCS1D01G405400.1 | Wheat | cytosol | 93.59 | 94.19 |
CDX83344 | Canola | cytosol | 94.23 | 93.63 |
CDY50916 | Canola | cytosol | 94.23 | 93.63 |
EES02888 | Sorghum | cytosol | 92.95 | 93.55 |
EES17768 | Sorghum | cytosol | 92.95 | 93.55 |
Os05t0160200-01 | Rice | nucleus | 92.95 | 93.55 |
Os01t0328400-01 | Rice | nucleus | 92.95 | 93.55 |
TraesCS1D01G109800.1 | Wheat | cytosol | 92.95 | 93.55 |
TraesCS1A01G105400.1 | Wheat | cytosol | 92.95 | 93.55 |
TraesCS1A01G397500.1 | Wheat | golgi, unclear | 92.95 | 93.55 |
TraesCS1B01G130900.1 | Wheat | cytosol | 92.95 | 93.55 |
AT2G47110.1 | Thale cress | cytosol | 93.59 | 92.99 |
CDY25100 | Canola | cytosol | 93.59 | 92.99 |
CDY66301 | Canola | cytosol | 93.59 | 92.99 |
CDY11410 | Canola | cytosol | 93.59 | 92.99 |
CDX93983 | Canola | cytosol | 93.59 | 92.99 |
CDX76623 | Canola | cytosol | 93.59 | 92.99 |
CDX67885 | Canola | cytosol | 93.59 | 92.99 |
AT3G62250.1 | Thale cress | cytosol | 92.95 | 92.36 |
CDY12472 | Canola | cytosol | 89.74 | 89.74 |
CDY25783 | Canola | cytosol | 89.74 | 89.74 |
CDY44146 | Canola | cytosol | 89.74 | 89.74 |
AT1G23410.1 | Thale cress | cytosol | 89.1 | 89.1 |
CDY04715 | Canola | cytosol | 89.1 | 89.1 |
HORVU1Hr1G023660.1 | Barley | extracellular | 92.95 | 81.01 |
Solyc12g099030.1.1 | Tomato | plastid | 98.08 | 80.53 |
PGSC0003DMT400011737 | Potato | cytosol | 91.67 | 79.01 |
Solyc03g082570.2.1 | Tomato | cytosol | 53.85 | 65.62 |
Solyc01g096290.2.1 | Tomato | cytosol | 53.85 | 65.62 |
Solyc08g083120.2.1 | Tomato | cytosol, nucleus | 53.85 | 65.62 |
Solyc08g008590.2.1 | Tomato | cytosol, nucleus | 53.21 | 61.03 |
Solyc10g005560.2.1 | Tomato | cytosol, nucleus | 55.13 | 55.84 |
Zm00001d032616_P001 | Maize | plastid | 53.85 | 53.85 |
Solyc11g005650.1.1 | Tomato | plasma membrane | 36.54 | 50.44 |
Solyc06g053210.2.1 | Tomato | cytosol | 51.92 | 43.09 |
HORVU1Hr1G087690.8 | Barley | nucleus | 73.08 | 42.54 |
Solyc11g005640.1.1 | Tomato | cytosol | 46.15 | 32.43 |
Solyc10g006480.1.1 | Tomato | cytosol, extracellular, nucleus, unclear | 60.26 | 20.57 |
Solyc07g064130.1.1 | Tomato | nucleus | 60.26 | 20.57 |
Solyc11g005670.1.1 | Tomato | cytosol, nucleus | 58.33 | 17.04 |
Solyc03g005610.2.1 | Tomato | cytosol | 24.36 | 9.45 |
Protein Annotations
MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0019538 | InterPro:IPR000626 | InterPro:IPR038582 | UniProt:K4AVQ8 | PFAM:PF00240 | PFAM:PF01599 |
PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF257 | InterPro:Ribosomal_S27a |
InterPro:Ribosomal_zn-bd | InterPro:S27a-like_sf | SMART:SM00213 | SMART:SM01402 | SUPFAM:SSF54236 | SUPFAM:SSF57829 |
EnsemblPlantsGene:Solyc01g056940.2 | EnsemblPlants:Solyc01g056940.2.1 | UniParc:UPI000276192D | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS |
InterPro:Ubiquitin_dom | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:57603976..57604731
Molecular Weight (calculated)
17732.7 Da
IEP (calculated)
10.438
GRAVY (calculated)
-0.774
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL
101: TVLQFYKVDD TGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKCGLTYVY NKAGGD
101: TVLQFYKVDD TGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKCGLTYVY NKAGGD
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
Arabidopsis Description
RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.