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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
nucleus: 25464976
plastid: 26371478
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400013321 Potato cytosol 99.36 99.36
PGSC0003DMT400011939 Potato cytosol 98.08 98.08
Solyc12g098940.1.1 Tomato cytosol, nucleus 98.08 98.08
VIT_17s0119g00050.t01 Wine grape cytosol 97.44 97.44
GSMUA_Achr8P22260_001 Banana cytosol 96.15 95.54
GSMUA_Achr3P08430_001 Banana cytosol 96.15 95.54
KRH69588 Soybean nucleus 94.87 95.48
KRH11776 Soybean nucleus 94.87 95.48
KRH74571 Soybean cytosol 94.87 95.48
GSMUA_AchrUn_... Banana cytosol 94.87 94.27
TraesCS1B01G425700.1 Wheat cytosol 93.59 94.19
KRH36782 Soybean nucleus 93.59 94.19
TraesCS1A01G397400.1 Wheat cytosol 93.59 94.19
TraesCS1D01G405400.1 Wheat cytosol 93.59 94.19
CDX83344 Canola cytosol 94.23 93.63
CDY50916 Canola cytosol 94.23 93.63
EES02888 Sorghum cytosol 92.95 93.55
EES17768 Sorghum cytosol 92.95 93.55
Os05t0160200-01 Rice nucleus 92.95 93.55
Os01t0328400-01 Rice nucleus 92.95 93.55
TraesCS1D01G109800.1 Wheat cytosol 92.95 93.55
TraesCS1A01G105400.1 Wheat cytosol 92.95 93.55
TraesCS1A01G397500.1 Wheat golgi, unclear 92.95 93.55
TraesCS1B01G130900.1 Wheat cytosol 92.95 93.55
AT2G47110.1 Thale cress cytosol 93.59 92.99
CDY25100 Canola cytosol 93.59 92.99
CDY66301 Canola cytosol 93.59 92.99
CDY11410 Canola cytosol 93.59 92.99
CDX93983 Canola cytosol 93.59 92.99
CDX76623 Canola cytosol 93.59 92.99
CDX67885 Canola cytosol 93.59 92.99
AT3G62250.1 Thale cress cytosol 92.95 92.36
CDY12472 Canola cytosol 89.74 89.74
CDY25783 Canola cytosol 89.74 89.74
CDY44146 Canola cytosol 89.74 89.74
AT1G23410.1 Thale cress cytosol 89.1 89.1
CDY04715 Canola cytosol 89.1 89.1
HORVU1Hr1G023660.1 Barley extracellular 92.95 81.01
Solyc12g099030.1.1 Tomato plastid 98.08 80.53
PGSC0003DMT400011737 Potato cytosol 91.67 79.01
Solyc03g082570.2.1 Tomato cytosol 53.85 65.62
Solyc01g096290.2.1 Tomato cytosol 53.85 65.62
Solyc08g083120.2.1 Tomato cytosol, nucleus 53.85 65.62
Solyc08g008590.2.1 Tomato cytosol, nucleus 53.21 61.03
Solyc10g005560.2.1 Tomato cytosol, nucleus 55.13 55.84
Zm00001d032616_P001 Maize plastid 53.85 53.85
Solyc11g005650.1.1 Tomato plasma membrane 36.54 50.44
Solyc06g053210.2.1 Tomato cytosol 51.92 43.09
HORVU1Hr1G087690.8 Barley nucleus 73.08 42.54
Solyc11g005640.1.1 Tomato cytosol 46.15 32.43
Solyc10g006480.1.1 Tomato cytosol, extracellular, nucleus, unclear 60.26 20.57
Solyc07g064130.1.1 Tomato nucleus 60.26 20.57
Solyc11g005670.1.1 Tomato cytosol, nucleus 58.33 17.04
Solyc03g005610.2.1 Tomato cytosol 24.36 9.45
Protein Annotations
MapMan:17.1.3.1.29Gene3D:2.20.25.660Gene3D:3.10.20.90GO:GO:0003674GO:GO:0003735GO:GO:0005198
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0019538InterPro:IPR000626InterPro:IPR038582UniProt:K4AVQ8PFAM:PF00240PFAM:PF01599
PRINTS:PR00348ScanProsite:PS00299PFscan:PS50053PANTHER:PTHR10666PANTHER:PTHR10666:SF257InterPro:Ribosomal_S27a
InterPro:Ribosomal_zn-bdInterPro:S27a-like_sfSMART:SM00213SMART:SM01402SUPFAM:SSF54236SUPFAM:SSF57829
EnsemblPlantsGene:Solyc01g056940.2EnsemblPlants:Solyc01g056940.2.1UniParc:UPI000276192DInterPro:UbiquitinInterPro:Ubiquitin-like_domsfInterPro:Ubiquitin_CS
InterPro:Ubiquitin_domSEG:seg::::
Description
No Description!
Coordinates
chr1:+:57603976..57604731
Molecular Weight (calculated)
17732.7 Da
IEP (calculated)
10.438
GRAVY (calculated)
-0.774
Length
156 amino acids
Sequence
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL
101: TVLQFYKVDD TGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKCGLTYVY NKAGGD
Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE
Arabidopsis Description
RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.