Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 86.36 | 81.1 |
| Solyc11g073060.1.1 | Tomato | nucleus | 52.6 | 52.6 |
| Solyc05g054650.1.1 | Tomato | plastid | 47.4 | 48.03 |
| Bra020284.1-P | Field mustard | nucleus | 32.47 | 44.64 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 46.75 | 43.11 |
| CDX71073 | Canola | nucleus | 42.86 | 41.77 |
| Bra006691.1-P | Field mustard | nucleus | 42.86 | 41.51 |
| Bra006692.1-P | Field mustard | nucleus | 42.86 | 41.51 |
| CDX88724 | Canola | nucleus | 42.86 | 41.51 |
| KRH29844 | Soybean | nucleus, plastid | 38.31 | 40.97 |
| AT3G46080.1 | Thale cress | nucleus | 43.51 | 40.85 |
| CDY09252 | Canola | nucleus | 40.91 | 40.13 |
| KRH23029 | Soybean | nucleus | 44.16 | 39.77 |
| CDY31593 | Canola | nucleus | 40.91 | 39.38 |
| CDY65692 | Canola | nucleus | 40.91 | 39.38 |
| CDX80226 | Canola | nucleus | 40.91 | 39.13 |
| KRH24840 | Soybean | nucleus | 39.61 | 39.1 |
| AT5G59820.1 | Thale cress | nucleus | 40.91 | 38.89 |
| Bra002528.1-P | Field mustard | nucleus | 40.26 | 38.75 |
| AT3G46090.1 | Thale cress | nucleus | 42.21 | 38.69 |
| KRH10294 | Soybean | nucleus | 42.86 | 38.37 |
| AT3G46070.1 | Thale cress | nucleus | 40.91 | 37.06 |
| CDY30924 | Canola | nucleus | 39.61 | 35.88 |
| Bra019477.1-P | Field mustard | nucleus | 39.61 | 35.88 |
| CDX68366 | Canola | nucleus | 39.61 | 34.46 |
| CDX99130 | Canola | nucleus | 41.56 | 33.33 |
| Bra018225.1-P | Field mustard | nucleus | 41.56 | 33.33 |
| Solyc03g093870.1.1 | Tomato | nucleus | 37.01 | 32.76 |
| CDY58688 | Canola | nucleus | 18.83 | 32.58 |
| CDY30925 | Canola | nucleus | 35.06 | 31.95 |
| Bra019476.1-P | Field mustard | nucleus | 35.06 | 31.95 |
| CDX86044 | Canola | nucleus | 42.21 | 31.86 |
| Solyc11g066400.1.1 | Tomato | nucleus, plastid | 41.56 | 21.77 |
| Solyc09g008440.1.1 | Tomato | nucleus | 40.91 | 20.32 |
| Solyc06g074800.1.1 | Tomato | nucleus | 41.56 | 19.63 |
| Solyc05g055500.1.1 | Tomato | nucleus | 37.01 | 15.75 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0010200 |
| InterPro:IPR013087 | UniProt:K4C9U3 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF198 | SMART:SM00355 | SUPFAM:SSF57667 | EnsemblPlantsGene:Solyc06g075780.1 | EnsemblPlants:Solyc06g075780.1.1 | UniParc:UPI0002766D4F |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:47095694..47096158
Molecular Weight (calculated)
17638.4 Da
IEP (calculated)
9.842
GRAVY (calculated)
-0.558
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKIREDKGE VEAQAMANCL MLLSSIDRDR RNSFECKTCK RRFSSFQALG GHRTSHKSTI DIGKFLHGKI SKKRKVHECL ICGMEFSMGQ ALGGHMRRHR
101: APVNEIEHSA KRIPVLKKSN SNERIFCVDL NLTPDENDDF HFWPMPPVPP FLSS
101: APVNEIEHSA KRIPVLKKSN SNERIFCVDL NLTPDENDDF HFWPMPPVPP FLSS
001: MVAISEIKST VDVTAANCLM LLSRVGQENV DGGDQKRVFT CKTCLKQFHS FQALGGHRAS HKKPNNDALS SGLMKKVKTS SHPCPICGVE FPMGQALGGH
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
101: MRRHRNESGA AGGALVTRAL LPEPTVTTLK KSSSGKRVAC LDLSLGMVDN LNLKLELGRT VY
Arabidopsis Description
ZAT12Zinc finger protein ZAT12 [Source:UniProtKB/Swiss-Prot;Acc:Q42410]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.