Factsheet for Solyc11g061760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13070.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G13070.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035362	Potato	nucleus	95.7	96.22
Solyc12g100050.1.1	Tomato	nucleus	86.56	87.03
VIT_06s0004g01810.t01	Wine grape	nucleus	79.03	79.46
AT5G13070.1	Thale cress	cytosol, mitochondrion, nucleus, peroxisome	76.88	78.14
KRH10183	Soybean	nucleus	77.42	77.84
Bra008859.1-P	Field mustard	nucleus	75.81	77.05
CDX69673	Canola	cytosol, mitochondrion, nucleus, peroxisome	75.27	76.5
CDX97222	Canola	cytosol, mitochondrion, nucleus, peroxisome	75.27	76.5
Bra023390.1-P	Field mustard	cytosol	74.73	75.96
CDX85672	Canola	cytosol	74.73	75.96
CDX91148	Canola	cytosol	74.19	75.41
GSMUA_Achr8P25620_001	Banana	cytosol	57.53	56.61
Zm00001d051661_P001	Maize	mitochondrion	52.69	50.0
EES05620	Sorghum	cytosol	52.69	50.0
Os02t0717900-01	Rice	cytosol	52.15	49.49
HORVU6Hr1G070680.2	Barley	cytosol	52.15	49.49
TraesCS6A01G281500.1	Wheat	cytosol	52.15	49.49
TraesCS6B01G310300.1	Wheat	cytosol	52.15	49.49
TraesCS6D01G262200.1	Wheat	cytosol	51.61	48.98
Os09t0486000-00	Rice	cytosol	44.62	44.86
TraesCS5D01G271000.1	Wheat	cytosol	44.62	42.35
Zm00001d020925_P001	Maize	cytosol	44.09	42.05
HORVU5Hr1G072870.1	Barley	cytosol, plastid	44.62	41.5
OQU89684	Sorghum	mitochondrion	45.16	41.18
TraesCS5B01G262700.1	Wheat	cytosol, plastid	44.09	41.0
TraesCS5A01G263400.1	Wheat	cytosol	42.47	40.31

Protein Annotations

MapMan:5.2.3.3.1.1.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005758	GO:GO:0006810	GO:GO:0008150	GO:GO:0015914
GO:GO:1990050	InterPro:IPR006797	UniProt:K4D8Y8	PFAM:PF04707	InterPro:PRELI/MSF1_dom	PFscan:PS50904
PANTHER:PTHR11158	PANTHER:PTHR11158:SF17	InterPro:Slowmo/Ups	EnsemblPlantsGene:Solyc11g061760.1	EnsemblPlants:Solyc11g061760.1.1	UniParc:UPI00027693AF

Description

No Description!

Coordinates

chr11:+:48395140..48395700

Molecular Weight (calculated)

21504.8 Da

IEP (calculated)

8.975

GRAVY (calculated)

-0.551

Length

186 amino acids

Sequence
(BLAST)

001: MVRAYSQEHI YRHPWERVTS ASWRKFADPV NKRVLSHILE VDTLDHKLDA NLGKLYTTRA ITIHAPGPWF VRKIIGQDIC HCIESTVVDA QSRSMQLSTR
101: NISLQNFIEV EEKIRYDPHP DNPNSWTVCK QETSIKIKPL SALASMAEKI EQKCVEKFQS NSAKGREVME RMCKYLEAEA RGTTKF

Best Arabidopsis Sequence Match ( AT5G13070.1 )
(BLAST)

001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI

Arabidopsis Description

At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [cytosol,nucleus,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.