Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G271000.1 | Wheat | cytosol | 93.5 | 95.41 |
| HORVU5Hr1G072870.1 | Barley | cytosol, plastid | 94.5 | 94.5 |
| TraesCS5A01G263400.1 | Wheat | cytosol | 92.5 | 94.39 |
| Os09t0486000-00 | Rice | cytosol | 72.0 | 77.84 |
| Zm00001d020925_P001 | Maize | cytosol | 72.5 | 74.36 |
| OQU89684 | Sorghum | mitochondrion | 73.5 | 72.06 |
| TraesCS6B01G310300.1 | Wheat | cytosol | 58.5 | 59.69 |
| GSMUA_Achr8P25620_001 | Banana | cytosol | 54.5 | 57.67 |
| CDX97222 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 45.0 | 49.18 |
| KRH10183 | Soybean | nucleus | 45.0 | 48.65 |
| VIT_06s0004g01810.t01 | Wine grape | nucleus | 45.0 | 48.65 |
| CDX91148 | Canola | cytosol | 44.5 | 48.63 |
| CDX85672 | Canola | cytosol | 44.5 | 48.63 |
| CDX69673 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 44.5 | 48.63 |
| Bra023390.1-P | Field mustard | cytosol | 44.5 | 48.63 |
| Bra008859.1-P | Field mustard | nucleus | 44.5 | 48.63 |
| AT5G13070.1 | Thale cress | cytosol, mitochondrion, nucleus, peroxisome | 44.0 | 48.09 |
| Solyc12g100050.1.1 | Tomato | nucleus | 42.5 | 45.95 |
| PGSC0003DMT400035362 | Potato | nucleus | 41.5 | 44.86 |
| PGSC0003DMT400061228 | Potato | nucleus | 41.5 | 44.86 |
| Solyc11g061760.1.1 | Tomato | nucleus | 41.0 | 44.09 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G262700.1 | EnsemblPlantsGene:TraesCS5B01G262700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005758 | InterPro:IPR006797 | InterPro:PRELI/MSF1_dom | InterPro:Slowmo/Ups | PANTHER:PTHR11158 |
| PANTHER:PTHR11158:SF28 | PFAM:PF04707 | PFscan:PS50904 | SEG:seg | MapMan:5.2.3.3.1.1.1 | : |
Description
No Description!
Coordinates
chr5B:+:447394063..447394665
Molecular Weight (calculated)
21751.9 Da
IEP (calculated)
7.543
GRAVY (calculated)
-0.161
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVSYTQEHV YLHPWHRVTA AAWRKFTDPA ARAAPLSHIL DVQTLSRDVD PRAGRLHAVR AIAGRPPPLP FLLRGLAATA GAGGVVLCVE RTSVDAAARA
101: MRVVSRNATF RRLVDVEERC SYAPHPERPD EWTVFTQETS IRCAPLAAVS ATVAEMVERR CAESFAQNAA KGKEVVERIC DGLALADHVP GPSPAEGEEQ
101: MRVVSRNATF RRLVDVEERC SYAPHPERPD EWTVFTQETS IRCAPLAAVS ATVAEMVERR CAESFAQNAA KGKEVVERIC DGLALADHVP GPSPAEGEEQ
001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
Arabidopsis Description
At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [cytosol,nucleus,peroxisome,mitochondrion]
SUBAcon: [cytosol,nucleus,peroxisome,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.