Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g100050.1.1 | Tomato | nucleus | 98.38 | 98.38 |
| PGSC0003DMT400035362 | Potato | nucleus | 87.57 | 87.57 |
| VIT_06s0004g01810.t01 | Wine grape | nucleus | 82.7 | 82.7 |
| AT5G13070.1 | Thale cress | cytosol, mitochondrion, nucleus, peroxisome | 80.54 | 81.42 |
| KRH10183 | Soybean | nucleus | 80.0 | 80.0 |
| Bra008859.1-P | Field mustard | nucleus | 78.38 | 79.23 |
| Bra023390.1-P | Field mustard | cytosol | 77.84 | 78.69 |
| CDX69673 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 77.84 | 78.69 |
| CDX85672 | Canola | cytosol | 77.84 | 78.69 |
| CDX91148 | Canola | cytosol | 77.3 | 78.14 |
| CDX97222 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 77.3 | 78.14 |
| GSMUA_Achr8P25620_001 | Banana | cytosol | 57.84 | 56.61 |
| Zm00001d051661_P001 | Maize | mitochondrion | 53.51 | 50.51 |
| EES05620 | Sorghum | cytosol | 53.51 | 50.51 |
| Os02t0717900-01 | Rice | cytosol | 51.35 | 48.47 |
| HORVU6Hr1G070680.2 | Barley | cytosol | 51.35 | 48.47 |
| TraesCS6A01G281500.1 | Wheat | cytosol | 51.35 | 48.47 |
| TraesCS6B01G310300.1 | Wheat | cytosol | 51.35 | 48.47 |
| TraesCS6D01G262200.1 | Wheat | cytosol | 51.35 | 48.47 |
| Os09t0486000-00 | Rice | cytosol | 44.86 | 44.86 |
| TraesCS5D01G271000.1 | Wheat | cytosol | 45.41 | 42.86 |
| HORVU5Hr1G072870.1 | Barley | cytosol, plastid | 45.41 | 42.0 |
| TraesCS5B01G262700.1 | Wheat | cytosol, plastid | 44.86 | 41.5 |
| Zm00001d020925_P001 | Maize | cytosol | 43.24 | 41.03 |
| TraesCS5A01G263400.1 | Wheat | cytosol | 43.24 | 40.82 |
| OQU89684 | Sorghum | mitochondrion | 44.32 | 40.2 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400061228 | EnsemblPlantsGene:PGSC0003DMG400023838 | EntrezGene:102606186 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005758 | InterPro:IPR006797 | InterPro:PRELI/MSF1_dom | InterPro:Slowmo/Ups |
| PANTHER:PTHR11158 | PANTHER:PTHR11158:SF17 | PFAM:PF04707 | PFscan:PS50904 | PGSC:PGSC0003DMG400023838 | RefSeq:XP_006365819.1 |
| UniParc:UPI000296E715 | UniProt:M1C792 | MapMan:5.2.3.3.1.1.1 | : | : | : |
Description
Protein MSF1 [Source:PGSC_GENE;Acc:PGSC0003DMG400023838]
Coordinates
chr12:-:60710049..60712332
Molecular Weight (calculated)
21420.7 Da
IEP (calculated)
8.955
GRAVY (calculated)
-0.625
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRAYSQEHT YKHPWERVTS ASWRKFADPE NKRILSHILE VDTLNHKLDS SSGKLYTTRA ITIHAPGPWF LRKIIRQDIC HCVESTVVDA QSQSMQLSTR
101: NISLEKYIEV EEKIRYDPHP DNPKLWTVCK QETSIRIKPL SALASMAEKI EQKCVDKFQA NSAKGREVME RMCKYLEAES RGISA
101: NISLEKYIEV EEKIRYDPHP DNPKLWTVCK QETSIRIKPL SALASMAEKI EQKCVDKFQA NSAKGREVME RMCKYLEAES RGISA
001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
Arabidopsis Description
At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.