CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023390.1-P	Field mustard	cytosol	98.91	98.91
CDX85672	Canola	cytosol	98.91	98.91
CDX69673	Canola	cytosol, mitochondrion, nucleus, peroxisome	95.08	95.08
AT5G13070.1	Thale cress	cytosol, mitochondrion, nucleus, peroxisome	95.08	95.08
CDX97222	Canola	cytosol, mitochondrion, nucleus, peroxisome	92.9	92.9
VIT_06s0004g01810.t01	Wine grape	nucleus	78.69	77.84
KRH10183	Soybean	nucleus	78.69	77.84
Solyc12g100050.1.1	Tomato	nucleus	78.14	77.3
PGSC0003DMT400061228	Potato	nucleus	78.14	77.3
Solyc11g061760.1.1	Tomato	nucleus	75.41	74.19
PGSC0003DMT400035362	Potato	nucleus	74.86	74.05
GSMUA_Achr8P25620_001	Banana	cytosol	59.02	57.14
EES05620	Sorghum	cytosol	57.38	53.57
Zm00001d051661_P001	Maize	mitochondrion	56.83	53.06
HORVU6Hr1G070680.2	Barley	cytosol	56.28	52.55
TraesCS6A01G281500.1	Wheat	cytosol	56.28	52.55
TraesCS6B01G310300.1	Wheat	cytosol	56.28	52.55
TraesCS6D01G262200.1	Wheat	cytosol	56.28	52.55
Os02t0717900-01	Rice	cytosol	55.74	52.04
Os09t0486000-00	Rice	cytosol	48.63	48.11
TraesCS5D01G271000.1	Wheat	cytosol	48.63	45.41
HORVU5Hr1G072870.1	Barley	cytosol, plastid	48.63	44.5
TraesCS5B01G262700.1	Wheat	cytosol, plastid	48.63	44.5
TraesCS5A01G263400.1	Wheat	cytosol	46.99	43.88
Zm00001d020925_P001	Maize	cytosol	46.45	43.59
OQU89684	Sorghum	mitochondrion	47.54	42.65

Protein Annotations

EnsemblPlants:CDX91148	EnsemblPlantsGene:GSBRNA2T00151941001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005758	InterPro:IPR006797	InterPro:PRELI/MSF1_dom	InterPro:Slowmo/Ups	PANTHER:PTHR11158
PANTHER:PTHR11158:SF17	PFAM:PF04707	PFscan:PS50904	ProteinID:CDX91148	ProteinID:CDX91148.1	UniParc:UPI0004EC7218
MapMan:5.2.3.3.1.1.1	:	:	:	:	:

Description

BnaC02g04490D

Coordinates

chrLK031865:-:1022375..1024016

Molecular Weight (calculated)

21206.6 Da

IEP (calculated)

8.994

GRAVY (calculated)

-0.585

Length

183 amino acids

Sequence
(BLAST)

001: MVKAYKQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRRLDT DTGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NITLKKFIEV EERIRYDPHP ENPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSMKGREVME RICRYMEAES APV

Best Arabidopsis Sequence Match ( AT5G13070.1 )
(BLAST)

001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI

Arabidopsis Description

At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [cytosol,nucleus,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.