Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g061760.1.1 | Tomato | nucleus | 96.22 | 95.7 |
| PGSC0003DMT400061228 | Potato | nucleus | 87.57 | 87.57 |
| VIT_06s0004g01810.t01 | Wine grape | nucleus | 80.54 | 80.54 |
| KRH10183 | Soybean | nucleus | 78.92 | 78.92 |
| AT5G13070.1 | Thale cress | cytosol, mitochondrion, nucleus, peroxisome | 77.3 | 78.14 |
| Bra008859.1-P | Field mustard | nucleus | 75.68 | 76.5 |
| CDX69673 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 75.14 | 75.96 |
| CDX97222 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 75.14 | 75.96 |
| Bra023390.1-P | Field mustard | cytosol | 74.59 | 75.41 |
| CDX85672 | Canola | cytosol | 74.59 | 75.41 |
| CDX91148 | Canola | cytosol | 74.05 | 74.86 |
| GSMUA_Achr8P25620_001 | Banana | cytosol | 58.92 | 57.67 |
| Zm00001d051661_P001 | Maize | mitochondrion | 54.05 | 51.02 |
| EES05620 | Sorghum | cytosol | 54.05 | 51.02 |
| Os02t0717900-01 | Rice | cytosol | 53.51 | 50.51 |
| HORVU6Hr1G070680.2 | Barley | cytosol | 53.51 | 50.51 |
| TraesCS6A01G281500.1 | Wheat | cytosol | 53.51 | 50.51 |
| TraesCS6B01G310300.1 | Wheat | cytosol | 53.51 | 50.51 |
| TraesCS6D01G262200.1 | Wheat | cytosol | 52.97 | 50.0 |
| Os09t0486000-00 | Rice | cytosol | 45.41 | 45.41 |
| Zm00001d020925_P001 | Maize | cytosol | 45.41 | 43.08 |
| TraesCS5D01G271000.1 | Wheat | cytosol | 45.41 | 42.86 |
| OQU89684 | Sorghum | mitochondrion | 45.95 | 41.67 |
| TraesCS5B01G262700.1 | Wheat | cytosol, plastid | 44.86 | 41.5 |
| HORVU5Hr1G072870.1 | Barley | cytosol, plastid | 44.86 | 41.5 |
| TraesCS5A01G263400.1 | Wheat | cytosol | 43.78 | 41.33 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035362 | EnsemblPlantsGene:PGSC0003DMG400013588 | EntrezGene:107057651 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005758 | InterPro:IPR006797 | InterPro:PRELI/MSF1_dom | InterPro:Slowmo/Ups |
| PANTHER:PTHR11158 | PANTHER:PTHR11158:SF17 | PFAM:PF04707 | PFscan:PS50904 | PGSC:PGSC0003DMG400013588 | RefSeq:XP_006354262.1 |
| UniParc:UPI000296CC50 | UniProt:M1B267 | MapMan:5.2.3.3.1.1.1 | : | : | : |
Description
Protein MSF1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013588]
Coordinates
chr11:+:34056611..34058179
Molecular Weight (calculated)
21261.5 Da
IEP (calculated)
8.485
GRAVY (calculated)
-0.519
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRAYSQEHI YRHPWERVTS ASWRKFADPM NKRALSHILE VDTLDHKLDA NLGKLYTTRA ITIHAPGPWF VRKIIGQDIC HCIESTVVDA QSRSMQLSTR
101: NISLQNFIEV EEKIRYDPHP DNPNSWTVCK QETSIKIKPL SALASMAEKI EQRCVEKFQS NSAKGREVME RMCKYLEAEA SGISA
101: NISLQNFIEV EEKIRYDPHP DNPNSWTVCK QETSIKIKPL SALASMAEKI EQRCVEKFQS NSAKGREVME RMCKYLEAEA SGISA
001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
Arabidopsis Description
At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.