Factsheet for GSMUA_Achr8P25620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0717900-01	Rice	cytosol	74.07	71.43
TraesCS6D01G262200.1	Wheat	cytosol	71.96	69.39
TraesCS6B01G310300.1	Wheat	cytosol	71.96	69.39
HORVU6Hr1G070680.2	Barley	cytosol	71.96	69.39
TraesCS6A01G281500.1	Wheat	cytosol	71.43	68.88
EES05620	Sorghum	cytosol	71.43	68.88
Zm00001d051661_P001	Maize	mitochondrion	70.9	68.37
VIT_06s0004g01810.t01	Wine grape	nucleus	63.49	64.86
KRH10183	Soybean	nucleus	62.96	64.32
AT5G13070.1	Thale cress	cytosol, mitochondrion, nucleus, peroxisome	58.2	60.11
Bra008859.1-P	Field mustard	nucleus	57.14	59.02
CDX91148	Canola	cytosol	57.14	59.02
CDX85672	Canola	cytosol	57.14	59.02
CDX69673	Canola	cytosol, mitochondrion, nucleus, peroxisome	57.14	59.02
Bra023390.1-P	Field mustard	cytosol	57.14	59.02
PGSC0003DMT400035362	Potato	nucleus	57.67	58.92
CDX97222	Canola	cytosol, mitochondrion, nucleus, peroxisome	56.61	58.47
Os09t0486000-00	Rice	cytosol	57.14	58.38
Solyc12g100050.1.1	Tomato	nucleus	57.14	58.38
PGSC0003DMT400061228	Potato	nucleus	56.61	57.84
Solyc11g061760.1.1	Tomato	nucleus	56.61	57.53
Zm00001d020925_P001	Maize	cytosol	59.26	57.44
HORVU5Hr1G072870.1	Barley	cytosol, plastid	58.2	55.0
TraesCS5D01G271000.1	Wheat	cytosol	56.61	54.59
TraesCS5B01G262700.1	Wheat	cytosol, plastid	57.67	54.5
OQU89684	Sorghum	mitochondrion	58.73	54.41
TraesCS5A01G263400.1	Wheat	cytosol	55.03	53.06

Protein Annotations

EnsemblPlants:GSMUA_Achr8P25620_001	EnsemblPlants:GSMUA_Achr8T25620_001	EnsemblPlantsGene:GSMUA_Achr8G25620_001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005758	InterPro:IPR006797	InterPro:PRELI/MSF1_dom	InterPro:Slowmo/Ups
PANTHER:PTHR11158	PANTHER:PTHR11158:SF28	PFAM:PF04707	PFscan:PS50904	UniParc:UPI0002948FFD	UniProt:M0TTL5
MapMan:5.2.3.3.1.1.1	:	:	:	:	:

Description

Putative Protein slowmo homolog 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G25620_001]

Coordinates

chr8:-:29434826..29435395

Molecular Weight (calculated)

21415.7 Da

IEP (calculated)

8.504

GRAVY (calculated)

-0.298

Length

189 amino acids

Sequence
(BLAST)

001: MVRAYTQDHV YHHPWDRVTT AAWRKFTDPD TPALLSHIVD VHTLHRRLDP ASGCLHAVRS ITVRSPPLPF ILRRILGQDA VVCHCVESTV VDARGRSMEI
101: VVRNASLRGL LEVEERSTYR PHPDLPEGWT AFRQQTNIRC KPLSALAAVA EKVEQRCAER FQQNSVKGRE VVERICKYLE AEASAAISC

Best Arabidopsis Sequence Match ( AT5G13070.1 )
(BLAST)

001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI

Arabidopsis Description

At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.