Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G281500.1 | Wheat | cytosol | 91.84 | 91.84 |
| TraesCS6B01G310300.1 | Wheat | cytosol | 91.33 | 91.33 |
| HORVU6Hr1G070680.2 | Barley | cytosol | 91.33 | 91.33 |
| TraesCS6D01G262200.1 | Wheat | cytosol | 90.82 | 90.82 |
| EES05620 | Sorghum | cytosol | 90.82 | 90.82 |
| Zm00001d051661_P001 | Maize | mitochondrion | 89.8 | 89.8 |
| GSMUA_Achr8P25620_001 | Banana | cytosol | 71.43 | 74.07 |
| Os09t0486000-00 | Rice | cytosol | 58.67 | 62.16 |
| VIT_06s0004g01810.t01 | Wine grape | nucleus | 54.08 | 57.3 |
| KRH10183 | Soybean | nucleus | 53.57 | 56.76 |
| CDX69673 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 52.55 | 56.28 |
| Bra008859.1-P | Field mustard | nucleus | 52.55 | 56.28 |
| AT5G13070.1 | Thale cress | cytosol, mitochondrion, nucleus, peroxisome | 52.04 | 55.74 |
| CDX91148 | Canola | cytosol | 52.04 | 55.74 |
| CDX97222 | Canola | cytosol, mitochondrion, nucleus, peroxisome | 51.53 | 55.19 |
| CDX85672 | Canola | cytosol | 51.53 | 55.19 |
| Bra023390.1-P | Field mustard | cytosol | 51.53 | 55.19 |
| PGSC0003DMT400035362 | Potato | nucleus | 50.51 | 53.51 |
| Solyc12g100050.1.1 | Tomato | nucleus | 49.49 | 52.43 |
| Solyc11g061760.1.1 | Tomato | nucleus | 49.49 | 52.15 |
| PGSC0003DMT400061228 | Potato | nucleus | 48.47 | 51.35 |
Protein Annotations
| EntrezGene:4330534 | MapMan:5.2.3.3.1.1.1 | EMBL:AK069653 | ProteinID:BAD12899.1 | ProteinID:BAF09850.1 | ProteinID:BAS80626.1 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | GO:GO:0005758 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015914 | GO:GO:1990050 |
| InterPro:IPR006797 | EnsemblPlantsGene:Os02g0717900 | EnsemblPlants:Os02t0717900-01 | PFAM:PF04707 | InterPro:PRELI/MSF1_dom | PFscan:PS50904 |
| PANTHER:PTHR11158 | PANTHER:PTHR11158:SF28 | UniProt:Q6ZGV3 | InterPro:Slowmo/Ups | UniParc:UPI00003503B7 | RefSeq:XP_015623054.1 |
| SEG:seg | : | : | : | : | : |
Description
MSF1 domain containing protein. (Os02t0717900-01)
Coordinates
chr2:-:29799480..29800579
Molecular Weight (calculated)
21987.3 Da
IEP (calculated)
9.368
GRAVY (calculated)
-0.330
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVYTQEHVY RHPWDRVTAA AWRKFTDPAS RTALSHVADV HTLHRRVDPE AGRLQAARSI TVRSPPLPFI LRRLLPAAAS SPSGAALCHC VETSLVDAPR
101: RAMDVVVRNV SLRGLIEVEE RSTYRPHPER PEEWTQFRQE TTIRCRPLSA LAAVAEKVET RCAERFLQNS AKGREVVERI CRYLEAEAAG AASSAI
101: RAMDVVVRNV SLRGLIEVEE RSTYRPHPER PEEWTQFRQE TTIRCRPLSA LAAVAEKVET RCAERFLQNS AKGREVVERI CRYLEAEAAG AASSAI
001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
Arabidopsis Description
At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.