Factsheet for Zm00001d051661_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05620	Sorghum	cytosol	97.96	97.96
TraesCS6A01G281500.1	Wheat	cytosol	89.8	89.8
Os02t0717900-01	Rice	cytosol	89.8	89.8
TraesCS6B01G310300.1	Wheat	cytosol	89.29	89.29
HORVU6Hr1G070680.2	Barley	cytosol	89.29	89.29
TraesCS6D01G262200.1	Wheat	cytosol	88.78	88.78
GSMUA_Achr8P25620_001	Banana	cytosol	68.37	70.9
Zm00001d020925_P001	Maize	cytosol	61.22	61.54
VIT_06s0004g01810.t01	Wine grape	nucleus	56.12	59.46
Bra008859.1-P	Field mustard	nucleus	53.57	57.38
CDX69673	Canola	cytosol, mitochondrion, nucleus, peroxisome	53.57	57.38
KRH10183	Soybean	nucleus	54.08	57.3
CDX97222	Canola	cytosol, mitochondrion, nucleus, peroxisome	53.06	56.83
CDX91148	Canola	cytosol	53.06	56.83
AT5G13070.1	Thale cress	cytosol, mitochondrion, nucleus, peroxisome	53.06	56.83
CDX85672	Canola	cytosol	52.55	56.28
Bra023390.1-P	Field mustard	cytosol	52.55	56.28
Solyc12g100050.1.1	Tomato	nucleus	51.53	54.59
PGSC0003DMT400035362	Potato	nucleus	51.02	54.05
PGSC0003DMT400061228	Potato	nucleus	50.51	53.51
Solyc11g061760.1.1	Tomato	nucleus	50.0	52.69

Protein Annotations

EMBL:BT062979	EnsemblPlants:Zm00001d051661_P001	EnsemblPlants:Zm00001d051661_T001	EnsemblPlantsGene:Zm00001d051661	EntrezGene:100285456	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005758	InterPro:IPR006797
InterPro:PRELI/MSF1_dom	InterPro:Slowmo/Ups	PANTHER:PTHR11158	PANTHER:PTHR11158:SF28	PFAM:PF04707	PFscan:PS50904
ProteinID:AQK54819.1	SEG:seg	UniParc:UPI0001948F88	UniProt:C0P3W0	MapMan:5.2.3.3.1.1.1	:

Description

MSF1-like family protein

Coordinates

chr4:+:165921927..165922517

Molecular Weight (calculated)

21952.1 Da

IEP (calculated)

8.848

GRAVY (calculated)

-0.336

Length

196 amino acids

Sequence
(BLAST)

001: MVVYTQEHVY RHPWDRVTAA AWRKFTDPAS CTALSHVADV HTLHRRLDSD TGRLQAARSI TVRSPPLPFV LRRLLPSAAA SPNGAALCHC VETSLVDAQR
101: RAMDVVVRNV SLRGLIEVEE RASYRPHPDR PDDWTQFRQE TTIRCRPLAA LAAVAEKVET RCAERFLQNS AKGREVVERI CRYLEAESAG AAPSVT

Best Arabidopsis Sequence Match ( AT5G13070.1 )
(BLAST)

001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI

Arabidopsis Description

At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.