Factsheet for Solyc12g100050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13070.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G13070.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061228	Potato	nucleus	98.38	98.38
Solyc11g061760.1.1	Tomato	nucleus	87.03	86.56
VIT_06s0004g01810.t01	Wine grape	nucleus	82.7	82.7
AT5G13070.1	Thale cress	cytosol, mitochondrion, nucleus, peroxisome	80.54	81.42
KRH10183	Soybean	nucleus	80.0	80.0
Bra008859.1-P	Field mustard	nucleus	78.38	79.23
Bra023390.1-P	Field mustard	cytosol	77.84	78.69
CDX69673	Canola	cytosol, mitochondrion, nucleus, peroxisome	77.84	78.69
CDX85672	Canola	cytosol	77.84	78.69
CDX91148	Canola	cytosol	77.3	78.14
CDX97222	Canola	cytosol, mitochondrion, nucleus, peroxisome	77.3	78.14
GSMUA_Achr8P25620_001	Banana	cytosol	58.38	57.14
Zm00001d051661_P001	Maize	mitochondrion	54.59	51.53
EES05620	Sorghum	cytosol	54.59	51.53
Os02t0717900-01	Rice	cytosol	52.43	49.49
HORVU6Hr1G070680.2	Barley	cytosol	52.43	49.49
TraesCS6A01G281500.1	Wheat	cytosol	52.43	49.49
TraesCS6B01G310300.1	Wheat	cytosol	52.43	49.49
TraesCS6D01G262200.1	Wheat	cytosol	52.43	49.49
Os09t0486000-00	Rice	cytosol	45.95	45.95
TraesCS5D01G271000.1	Wheat	cytosol	46.49	43.88
HORVU5Hr1G072870.1	Barley	cytosol, plastid	46.49	43.0
TraesCS5B01G262700.1	Wheat	cytosol, plastid	45.95	42.5
Zm00001d020925_P001	Maize	cytosol	44.32	42.05
TraesCS5A01G263400.1	Wheat	cytosol	44.32	41.84
OQU89684	Sorghum	mitochondrion	45.41	41.18

Protein Annotations

MapMan:5.2.3.3.1.1.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005758	GO:GO:0006810	GO:GO:0008150	GO:GO:0015914
GO:GO:1990050	InterPro:IPR006797	UniProt:K4DI26	PFAM:PF04707	InterPro:PRELI/MSF1_dom	PFscan:PS50904
PANTHER:PTHR11158	PANTHER:PTHR11158:SF17	InterPro:Slowmo/Ups	EnsemblPlantsGene:Solyc12g100050.1	EnsemblPlants:Solyc12g100050.1.1	UniParc:UPI000276AB66

Description

No Description!

Coordinates

chr12:-:66943746..66944303

Molecular Weight (calculated)

21502.8 Da

IEP (calculated)

9.200

GRAVY (calculated)

-0.605

Length

185 amino acids

Sequence
(BLAST)

001: MVRAYSQEHT YKHPWERVTS ASWRKFADPE NKRILSHILE VDTLNHKLDS ISGRLYTTRA ITIHAPGPWF LRKIIRQDIC HCVESTVVDA QSRSMQLSTR
101: NISLEKYIEV EEKIRYDPHP DNPKLWTVCK QETSIRIKPL SALASMAEKI EQKCVDKFQA NSAKGREVME RMCKYLEAES RGISA

Best Arabidopsis Sequence Match ( AT5G13070.1 )
(BLAST)

001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI

Arabidopsis Description

At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.