Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85672 | Canola | cytosol | 100.0 | 100.0 |
| CDX91148 | Canola | cytosol | 98.91 | 98.91 |
| Bra008859.1-P | Field mustard | nucleus | 96.17 | 96.17 |
| AT5G13070.1 | Thale cress | cytosol, mitochondrion, nucleus, peroxisome | 95.63 | 95.63 |
| VIT_06s0004g01810.t01 | Wine grape | nucleus | 79.78 | 78.92 |
| KRH10183 | Soybean | nucleus | 79.23 | 78.38 |
| Solyc12g100050.1.1 | Tomato | nucleus | 78.69 | 77.84 |
| PGSC0003DMT400061228 | Potato | nucleus | 78.69 | 77.84 |
| Solyc11g061760.1.1 | Tomato | nucleus | 75.96 | 74.73 |
| PGSC0003DMT400035362 | Potato | nucleus | 75.41 | 74.59 |
| GSMUA_Achr8P25620_001 | Banana | cytosol | 59.02 | 57.14 |
| EES05620 | Sorghum | cytosol | 56.83 | 53.06 |
| Zm00001d051661_P001 | Maize | mitochondrion | 56.28 | 52.55 |
| HORVU6Hr1G070680.2 | Barley | cytosol | 55.74 | 52.04 |
| TraesCS6A01G281500.1 | Wheat | cytosol | 55.74 | 52.04 |
| TraesCS6B01G310300.1 | Wheat | cytosol | 55.74 | 52.04 |
| TraesCS6D01G262200.1 | Wheat | cytosol | 55.74 | 52.04 |
| Os02t0717900-01 | Rice | cytosol | 55.19 | 51.53 |
| Os09t0486000-00 | Rice | cytosol | 48.09 | 47.57 |
| TraesCS5D01G271000.1 | Wheat | cytosol | 48.63 | 45.41 |
| HORVU5Hr1G072870.1 | Barley | cytosol, plastid | 48.63 | 44.5 |
| TraesCS5B01G262700.1 | Wheat | cytosol, plastid | 48.63 | 44.5 |
| TraesCS5A01G263400.1 | Wheat | cytosol | 46.99 | 43.88 |
| Zm00001d020925_P001 | Maize | cytosol | 46.45 | 43.59 |
| OQU89684 | Sorghum | mitochondrion | 47.54 | 42.65 |
Protein Annotations
| EnsemblPlants:Bra023390.1 | EnsemblPlants:Bra023390.1-P | EnsemblPlantsGene:Bra023390 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005758 | InterPro:IPR006797 | InterPro:PRELI/MSF1_dom | InterPro:Slowmo/Ups |
| PANTHER:PTHR11158 | PANTHER:PTHR11158:SF17 | PFAM:PF04707 | PFscan:PS50904 | UniParc:UPI0002543474 | UniProt:M4E3N7 |
| MapMan:5.2.3.3.1.1.1 | : | : | : | : | : |
Description
AT5G13070 (E=8e-102) | MSF1-like family protein
Coordinates
chrA02:+:3156932..3157619
Molecular Weight (calculated)
21146.5 Da
IEP (calculated)
8.990
GRAVY (calculated)
-0.569
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKAYKQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT DTGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NITLKKFIEV EERIRYDPHP ENPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSVKGREVME RICRYMEAES APV
101: NITLKKFIEV EERIRYDPHP ENPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSVKGREVME RICRYMEAES APV
001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI
Arabidopsis Description
At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.