CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13070.1	KRH10294	AT3G46090.1	17259181
AT5G13070.1	KRH23029	AT3G46090.1	17259181
AT5G13070.1	KRH24840	AT3G46090.1	17259181
AT5G13070.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01810.t01	Wine grape	nucleus	84.86	84.86
AT5G13070.1	Thale cress	cytosol, mitochondrion, nucleus, peroxisome	79.46	80.33
Solyc12g100050.1.1	Tomato	nucleus	80.0	80.0
PGSC0003DMT400061228	Potato	nucleus	80.0	80.0
Bra008859.1-P	Field mustard	nucleus	78.92	79.78
Bra023390.1-P	Field mustard	cytosol	78.38	79.23
CDX69673	Canola	cytosol, mitochondrion, nucleus, peroxisome	78.38	79.23
CDX85672	Canola	cytosol	78.38	79.23
PGSC0003DMT400035362	Potato	nucleus	78.92	78.92
CDX91148	Canola	cytosol	77.84	78.69
CDX97222	Canola	cytosol, mitochondrion, nucleus, peroxisome	77.84	78.69
Solyc11g061760.1.1	Tomato	nucleus	77.84	77.42
GSMUA_Achr8P25620_001	Banana	cytosol	64.32	62.96
Zm00001d051661_P001	Maize	mitochondrion	57.3	54.08
EES05620	Sorghum	cytosol	57.3	54.08
Os02t0717900-01	Rice	cytosol	56.76	53.57
HORVU6Hr1G070680.2	Barley	cytosol	56.22	53.06
TraesCS6A01G281500.1	Wheat	cytosol	56.22	53.06
TraesCS6B01G310300.1	Wheat	cytosol	56.22	53.06
TraesCS6D01G262200.1	Wheat	cytosol	56.22	53.06
Zm00001d020925_P001	Maize	cytosol	51.35	48.72
Os09t0486000-00	Rice	cytosol	48.65	48.65
OQU89684	Sorghum	mitochondrion	50.81	46.08
HORVU5Hr1G072870.1	Barley	cytosol, plastid	49.73	46.0
TraesCS5D01G271000.1	Wheat	cytosol	48.65	45.92
TraesCS5B01G262700.1	Wheat	cytosol, plastid	48.65	45.0
TraesCS5A01G263400.1	Wheat	cytosol	47.03	44.39

Protein Annotations

EntrezGene:100305538	MapMan:5.2.3.3.1.1.1	EMBL:ACUP02009121	EnsemblPlantsGene:GLYMA_15G033100	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005758
GO:GO:0006810	GO:GO:0008150	GO:GO:0015914	GO:GO:1990050	UniProt:I1MD98	InterPro:IPR006797
ProteinID:KRH10182.1	EnsemblPlants:KRH10183	ProteinID:KRH10183	ProteinID:KRH10183.1	PFAM:PF04707	InterPro:PRELI/MSF1_dom
PFscan:PS50904	PANTHER:PTHR11158	PANTHER:PTHR11158:SF17	InterPro:Slowmo/Ups	UniParc:UPI000233B5ED	:

Description

hypothetical protein

Coordinates

chr15:+:2652528..2654283

Molecular Weight (calculated)

21392.7 Da

IEP (calculated)

8.290

GRAVY (calculated)

-0.468

Length

185 amino acids

Sequence
(BLAST)

001: MVKAYTQEHV YKHPWERVTC ASWRKFADQE NKRILSHILD VDTLNHSLDP SSGMLYTTRA ITIHCPGPWF VRKIVGQDIC HCVESTVVDA RSRSMQLTSR
101: NISLQKFIEV EEKIRYDPHP DNPTGWTICQ QETRIRIKPL SALASMAEKV EQRCAEKFLQ NSVKGREVME RICKYLEAES SSLAL

Best Arabidopsis Sequence Match ( AT5G13070.1 )
(BLAST)

001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI

Arabidopsis Description

At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.