Factsheet for VIT_06s0004g01810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10183	Soybean	nucleus	84.86	84.86
Solyc12g100050.1.1	Tomato	nucleus	82.7	82.7
PGSC0003DMT400061228	Potato	nucleus	82.7	82.7
AT5G13070.1	Thale cress	cytosol, mitochondrion, nucleus, peroxisome	80.54	81.42
PGSC0003DMT400035362	Potato	nucleus	80.54	80.54
Bra023390.1-P	Field mustard	cytosol	78.92	79.78
CDX85672	Canola	cytosol	78.92	79.78
Bra008859.1-P	Field mustard	nucleus	78.38	79.23
CDX69673	Canola	cytosol, mitochondrion, nucleus, peroxisome	78.38	79.23
Solyc11g061760.1.1	Tomato	nucleus	79.46	79.03
CDX91148	Canola	cytosol	77.84	78.69
CDX97222	Canola	cytosol, mitochondrion, nucleus, peroxisome	77.3	78.14
GSMUA_Achr8P25620_001	Banana	cytosol	64.86	63.49
Zm00001d051661_P001	Maize	mitochondrion	59.46	56.12
EES05620	Sorghum	cytosol	59.46	56.12
Os02t0717900-01	Rice	cytosol	57.3	54.08
HORVU6Hr1G070680.2	Barley	cytosol	56.76	53.57
TraesCS6A01G281500.1	Wheat	cytosol	56.76	53.57
TraesCS6B01G310300.1	Wheat	cytosol	56.76	53.57
TraesCS6D01G262200.1	Wheat	cytosol	56.76	53.57
Os09t0486000-00	Rice	cytosol	49.73	49.73
Zm00001d020925_P001	Maize	cytosol	50.27	47.69
HORVU5Hr1G072870.1	Barley	cytosol, plastid	50.27	46.5
TraesCS5D01G271000.1	Wheat	cytosol	49.19	46.43
OQU89684	Sorghum	mitochondrion	50.27	45.59
TraesCS5B01G262700.1	Wheat	cytosol, plastid	48.65	45.0
TraesCS5A01G263400.1	Wheat	cytosol	47.03	44.39

Protein Annotations

EntrezGene:100262074	wikigene:100262074	MapMan:5.2.3.3.1.1.1	ProteinID:CBI16409	ProteinID:CBI16409.3	UniProt:D7SL81
EMBL:FN594951	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005758	GO:GO:0006810	GO:GO:0008150	GO:GO:0015914
GO:GO:1990050	InterPro:IPR006797	EntrezGene:LOC100262074	wikigene:LOC100262074	PFAM:PF04707	InterPro:PRELI/MSF1_dom
PFscan:PS50904	PANTHER:PTHR11158	PANTHER:PTHR11158:SF17	InterPro:Slowmo/Ups	UniParc:UPI000198369C	ArrayExpress:VIT_06s0004g01810
EnsemblPlantsGene:VIT_06s0004g01810	EnsemblPlants:VIT_06s0004g01810.t01	unigene:Vvi.19588	RefSeq:XP_002285535	RefSeq:XP_002285535.1	:

Description

No Description!

Coordinates

chr6:+:2244129..2245049

Molecular Weight (calculated)

21389.7 Da

IEP (calculated)

8.978

GRAVY (calculated)

-0.555

Length

185 amino acids

Sequence
(BLAST)

001: MVKAYTQEHV YKHPWERVTS ASWRKFTDPE NKRILSHIVE VDTLNRKLDS ASGKLYTTRV ITVHAPGPWF IRKIIGQDIC HCVESTIVDA QSRSMQLTTR
101: NSSLQKFVEV EEKIRYEPHP DNPNGWTICQ QETSIRIKPL SALASMAEKV EQRCAEKFLQ NSVKGREVME RICKYLEAES RGISI

Best Arabidopsis Sequence Match ( AT5G13070.1 )
(BLAST)

001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI

Arabidopsis Description

At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [cytosol,nucleus,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.