CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051661_P001	Maize	mitochondrion	97.96	97.96
Os02t0717900-01	Rice	cytosol	90.82	90.82
TraesCS6A01G281500.1	Wheat	cytosol	90.31	90.31
TraesCS6B01G310300.1	Wheat	cytosol	89.8	89.8
HORVU6Hr1G070680.2	Barley	cytosol	89.8	89.8
TraesCS6D01G262200.1	Wheat	cytosol	89.29	89.29
GSMUA_Achr8P25620_001	Banana	cytosol	68.88	71.43
VIT_06s0004g01810.t01	Wine grape	nucleus	56.12	59.46
OQU89684	Sorghum	mitochondrion	61.73	59.31
CDX69673	Canola	cytosol, mitochondrion, nucleus, peroxisome	54.08	57.92
Bra008859.1-P	Field mustard	nucleus	54.08	57.92
AT5G13070.1	Thale cress	cytosol, mitochondrion, nucleus, peroxisome	53.57	57.38
CDX97222	Canola	cytosol, mitochondrion, nucleus, peroxisome	53.57	57.38
CDX91148	Canola	cytosol	53.57	57.38
KRH10183	Soybean	nucleus	54.08	57.3
CDX85672	Canola	cytosol	53.06	56.83
Bra023390.1-P	Field mustard	cytosol	53.06	56.83
Solyc12g100050.1.1	Tomato	nucleus	51.53	54.59
PGSC0003DMT400035362	Potato	nucleus	51.02	54.05
PGSC0003DMT400061228	Potato	nucleus	50.51	53.51
Solyc11g061760.1.1	Tomato	nucleus	50.0	52.69

Protein Annotations

MapMan:5.2.3.3.1.1.1	UniProt:C5XZV3	EnsemblPlants:EES05620	ProteinID:EES05620	ProteinID:EES05620.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005758	GO:GO:0006810	GO:GO:0008150	GO:GO:0015914	GO:GO:1990050	InterPro:IPR006797
PFAM:PF04707	InterPro:PRELI/MSF1_dom	PFscan:PS50904	PANTHER:PTHR11158	PANTHER:PTHR11158:SF28	EnsemblPlantsGene:SORBI_3004G259600
InterPro:Slowmo/Ups	UniParc:UPI0001A85D10	RefSeq:XP_002452644.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:60487169..60487759

Molecular Weight (calculated)

22042.3 Da

IEP (calculated)

9.369

GRAVY (calculated)

-0.357

Length

196 amino acids

Sequence
(BLAST)

001: MVVYTQEHVY RHPWDRVTAA AWRKFTDPAS RTALSHVADV HTLHRRLDSD TGRLHAARSI TVRSPPLPFV LRRLLPSAAS SPNGAALCHC VETSLVDAQR
101: RAMDVVVRNV SLRGLIEVEE RASYRPHPDR PDDWTQFRQE TTIRCRPLAA LAAVAEKVET RCAERFLQNS AKGREVVERI CRYLEAESAG AAPSVI

Best Arabidopsis Sequence Match ( AT5G13070.1 )
(BLAST)

001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI

Arabidopsis Description

At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [cytosol,nucleus,peroxisome,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.