CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d020925_P001	Maize	cytosol	84.8	88.72
Os09t0486000-00	Rice	cytosol	70.59	77.84
TraesCS5D01G271000.1	Wheat	cytosol	71.57	74.49
HORVU5Hr1G072870.1	Barley	cytosol, plastid	72.55	74.0
TraesCS5B01G262700.1	Wheat	cytosol, plastid	72.06	73.5
TraesCS5A01G263400.1	Wheat	cytosol	70.59	73.47
EES05620	Sorghum	cytosol	59.31	61.73
GSMUA_Achr8P25620_001	Banana	cytosol	54.41	58.73
KRH10183	Soybean	nucleus	46.08	50.81
VIT_06s0004g01810.t01	Wine grape	nucleus	45.59	50.27
CDX97222	Canola	cytosol, mitochondrion, nucleus, peroxisome	43.14	48.09
CDX91148	Canola	cytosol	42.65	47.54
CDX85672	Canola	cytosol	42.65	47.54
CDX69673	Canola	cytosol, mitochondrion, nucleus, peroxisome	42.65	47.54
Bra023390.1-P	Field mustard	cytosol	42.65	47.54
Bra008859.1-P	Field mustard	nucleus	42.65	47.54
AT5G13070.1	Thale cress	cytosol, mitochondrion, nucleus, peroxisome	42.16	46.99
PGSC0003DMT400035362	Potato	nucleus	41.67	45.95
Solyc12g100050.1.1	Tomato	nucleus	41.18	45.41
Solyc11g061760.1.1	Tomato	nucleus	41.18	45.16
PGSC0003DMT400061228	Potato	nucleus	40.2	44.32

Protein Annotations

EnsemblPlants:OQU89684	EnsemblPlantsGene:SORBI_3002G245700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005758	InterPro:IPR006797	InterPro:PRELI/MSF1_dom	InterPro:Slowmo/Ups	PANTHER:PTHR11158
PANTHER:PTHR11158:SF28	PFAM:PF04707	PFscan:PS50904	ProteinID:OQU89684	ProteinID:OQU89684.1	SEG:seg
UniParc:UPI0009DC924D	UniProt:A0A1W0W5J6	MapMan:5.2.3.3.1.1.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:63406874..63410022

Molecular Weight (calculated)

22601.8 Da

IEP (calculated)

7.543

GRAVY (calculated)

-0.289

Length

204 amino acids

Sequence
(BLAST)

001: MVVSYTQEHV YRHPWHRVTA AAWRKFTDPA ARAADSGALS HILDVHTLSR DVDAVSGRLR AVRAIAGRTP PLPLLLRGLV AGGAAGGGDV VVLCVERTDV
101: DAPARDMRVA SRNATLRGLV DVQERCSYEP HPARPDEWTL FRQETTIRCA PLAAVAAKLA ELVERRCAER FTQNADRGKE VVERICQDLA VEEDSYTHST
201: ERLW

Best Arabidopsis Sequence Match ( AT5G13070.1 )
(BLAST)

001: MVKAYRQEHV YKHPWERVSA ASWRKFADPE NKRILSHILE VDTLNRKLDT ETGKLHTTRA LTIHAPGPWF LHRIIGQDIC HCVESTVVDG KSRSMQLTTK
101: NISLKKFIEV EERIRYDPHP DNPSAWTVCS QETSIRIKPL SALASMAEKV EQKCAEKFMQ NSAKGREVME RICKYMEAES ARI

Arabidopsis Description

At5g13070 [Source:UniProtKB/TrEMBL;Acc:Q9FYA3]
SUBAcon: [mitochondrion,peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.