Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH23029 | Soybean | nucleus | 91.28 | 91.81 |
| KRH29844 | Soybean | nucleus, plastid | 55.23 | 65.97 |
| KRH24840 | Soybean | nucleus | 58.14 | 64.1 |
| Solyc11g073060.1.1 | Tomato | nucleus | 42.44 | 47.4 |
| KRH32333 | Soybean | nucleus | 44.77 | 46.95 |
| KRH19739 | Soybean | cytosol, nucleus | 43.02 | 46.54 |
| PGSC0003DMT400040143 | Potato | nucleus | 44.77 | 46.39 |
| KRG90559 | Soybean | nucleus | 45.93 | 45.66 |
| KRG95848 | Soybean | nucleus | 45.35 | 45.61 |
| Bra020284.1-P | Field mustard | nucleus | 29.65 | 45.54 |
| PGSC0003DMT400040144 | Potato | nucleus | 43.6 | 45.45 |
| PGSC0003DMT400040142 | Potato | nucleus | 43.6 | 45.45 |
| PGSC0003DMT400040141 | Potato | nucleus | 44.77 | 45.29 |
| KRH67565 | Soybean | cytosol, nucleus, plastid | 41.86 | 45.28 |
| KRH01600 | Soybean | cytosol, extracellular, nucleus | 45.93 | 45.14 |
| PGSC0003DMT400040207 | Potato | nucleus | 43.02 | 45.12 |
| PGSC0003DMT400040206 | Potato | nucleus | 44.77 | 45.03 |
| KRH67564 | Soybean | nucleus | 44.77 | 44.51 |
| KRH70509 | Soybean | nucleus | 46.51 | 44.44 |
| KRG95850 | Soybean | nucleus | 38.95 | 43.23 |
| KRH32335 | Soybean | nucleus | 44.77 | 43.02 |
| KRH19742 | Soybean | nucleus | 45.35 | 42.86 |
| Solyc06g075780.1.1 | Tomato | nucleus | 38.37 | 42.86 |
| KRH36195 | Soybean | extracellular | 45.93 | 42.7 |
| PGSC0003DMT400077934 | Potato | cytosol, nucleus, plastid | 40.7 | 42.68 |
| KRH67566 | Soybean | nucleus | 38.95 | 42.41 |
| CDY31593 | Canola | nucleus | 37.21 | 40.0 |
| CDX71073 | Canola | nucleus | 36.63 | 39.87 |
| CDX80226 | Canola | nucleus | 37.21 | 39.75 |
| Bra002528.1-P | Field mustard | nucleus | 36.63 | 39.38 |
| AT3G46080.1 | Thale cress | nucleus | 37.21 | 39.02 |
| Bra006691.1-P | Field mustard | nucleus | 36.05 | 38.99 |
| Bra006692.1-P | Field mustard | nucleus | 36.05 | 38.99 |
| CDX88724 | Canola | nucleus | 36.05 | 38.99 |
| CDY09252 | Canola | nucleus | 35.47 | 38.85 |
| CDY65692 | Canola | nucleus | 36.05 | 38.75 |
| AT5G59820.1 | Thale cress | nucleus | 36.05 | 38.27 |
| KRH19741 | Soybean | nucleus | 38.95 | 38.07 |
| CDY30924 | Canola | nucleus | 37.21 | 37.65 |
| AT3G46090.1 | Thale cress | nucleus | 36.63 | 37.5 |
| CDY58688 | Canola | nucleus | 19.19 | 37.08 |
| Bra019477.1-P | Field mustard | nucleus | 36.63 | 37.06 |
| KRH32334 | Soybean | nucleus | 38.95 | 37.02 |
| CDX68366 | Canola | nucleus | 37.79 | 36.72 |
| AT3G46070.1 | Thale cress | nucleus | 34.88 | 35.29 |
| CDY30925 | Canola | nucleus | 33.72 | 34.32 |
| Bra019476.1-P | Field mustard | nucleus | 33.72 | 34.32 |
| CDX99130 | Canola | nucleus | 37.79 | 33.85 |
| Bra018225.1-P | Field mustard | nucleus | 37.21 | 33.33 |
| CDX86044 | Canola | nucleus | 36.63 | 30.88 |
| KRH67769 | Soybean | nucleus | 37.79 | 30.09 |
| KRH19960 | Soybean | nucleus | 38.95 | 23.26 |
| KRH30555 | Soybean | nucleus | 40.7 | 22.73 |
| KRH25111 | Soybean | nucleus, plastid | 41.28 | 22.54 |
| KRH32562 | Soybean | nucleus | 38.95 | 22.48 |
| KRH22825 | Soybean | nucleus | 39.53 | 21.59 |
| KRH26537 | Soybean | nucleus, plastid | 38.95 | 21.41 |
| KRG92135 | Soybean | nucleus | 38.95 | 20.49 |
| KRG96047 | Soybean | mitochondrion | 40.7 | 19.39 |
| KRH34655 | Soybean | nucleus | 39.53 | 19.1 |
Protein Annotations
| EntrezGene:100813871 | MapMan:15.5.15 | Gene3D:3.30.160.60 | ProteinID:AAZ03389.1 | EMBL:ACUP02009132 | EnsemblPlantsGene:GLYMA_15G040700 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0010200 | InterPro:IPR013087 | EnsemblPlants:KRH10294 |
| ProteinID:KRH10294 | ProteinID:KRH10294.1 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF162 | UniProt:Q4FH86 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0000552B69 | InterPro:Znf_C2H2_sf |
| InterPro:Znf_C2H2_type | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr15:-:3194771..3195657
Molecular Weight (calculated)
19178.4 Da
IEP (calculated)
8.978
GRAVY (calculated)
-0.532
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRGREESKL DMANCLMLLT KVGESETNYP ISKGSDIGDF KCKTCNRRFS SFQALGGHRA SHKKPKLMVT DLSCHQELPN PTMKQQPRMH PCPICGLEFA
101: IGQALGGHMR KHRTAINDGL LCGKPSSSLS ILKESSKDGD QKLNLRLDLN LTPLEEDDLK LNLRTPVLNC FI
101: IGQALGGHMR KHRTAINDGL LCGKPSSSLS ILKESSKDGD QKLNLRLDLN LTPLEEDDLK LNLRTPVLNC FI
001: MERGRSDMEM INNMANCLIL LSKAHQNDTK SRVFACKTCN KEFPSFQALG GHRASHRRSA ALEGHAPPSP KRVKPVKHEC PICGAEFAVG QALGGHMRKH
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
101: RGGSGGGGGR SLAPATAPVT MKKSGGGNGK RVLCLDLNLT PLENEDLKLE LGRFIF
Arabidopsis Description
At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.