CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16190.1	KRH10294	AT3G46090.1	17259181
AT3G16190.1	KRH23029	AT3G46090.1	17259181
AT3G16190.1	KRH24840	AT3G46090.1	17259181
AT3G16190.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04150.t01	Wine grape	cytosol	75.38	76.92
Solyc03g120540.2.1	Tomato	cytosol	72.36	73.1
Bra027184.1-P	Field mustard	cytosol	71.86	72.96
VIT_09s0002g04140.t01	Wine grape	cytosol	67.84	72.19
CDX97729	Canola	cytosol	71.36	72.08
AT3G16190.1	Thale cress	cytosol	70.35	71.43
PGSC0003DMT400006782	Potato	cytosol	70.35	71.07
Os02t0276200-01	Rice	cytosol	62.31	69.66
KXG30028	Sorghum	cytosol	66.33	67.69
KRH47257	Soybean	mitochondrion	88.44	66.17
Os02t0276400-01	Rice	plasma membrane	63.32	62.69
KRH44325	Soybean	mitochondrion	52.26	55.03
Zm00001d015986_P002	Maize	extracellular	66.83	54.73
KXG30030	Sorghum	extracellular	66.33	54.1
TraesCS7A01G122900.1	Wheat	endoplasmic reticulum, extracellular	66.33	53.23
TraesCS7D01G121100.1	Wheat	endoplasmic reticulum, extracellular	65.83	53.04
TraesCS7B01G022000.1	Wheat	endoplasmic reticulum, extracellular	64.32	51.82
TraesCS4D01G145000.1	Wheat	endoplasmic reticulum, extracellular	63.32	50.81
HORVU7Hr1G025910.4	Barley	peroxisome	59.3	37.34
TraesCS1D01G133100.1	Wheat	extracellular, peroxisome, plastid	23.62	28.14
VIT_18s0001g10290.t01	Wine grape	cytosol, peroxisome, plastid	21.11	27.27
HORVU3Hr1G038260.3	Barley	mitochondrion	15.58	16.32
HORVU4Hr1G043950.16	Barley	plastid	19.6	12.34

Protein Annotations

EntrezGene:100499982	Gene3D:3.40.50.850	MapMan:35.1	EMBL:ACUP02004927	EnsemblPlantsGene:GLYMA_08G203800	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006212	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	UniProt:I1KV55
InterPro:IPR036380	InterPro:Isochorismatase-like	InterPro:Isochorismatase-like_sf	EnsemblPlants:KRH44327	ProteinID:KRH44327	ProteinID:KRH44327.1
PFAM:PF00857	PANTHER:PTHR11080	PANTHER:PTHR11080:SF58	SUPFAM:SSF52499	UniParc:UPI00023C62F0	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:16531855..16534605

Molecular Weight (calculated)

21854.3 Da

IEP (calculated)

6.012

GRAVY (calculated)

0.007

Length

199 amino acids

Sequence
(BLAST)

001: MAEDWNRTAL LVIDMQKDFI EDWSPVALKG GKDIVPNVIK AVEVARQRGI LIVWVVREND PLGRDVELFR RHHYTAGKVG PANKGSEGAE LVDGLVIKEG
101: DYKLVKTRFS AFFATHLHSV LQGAGINNLV VTALFVGVQT PNCIRQTVFD AVSLDYQPVT VIVDATAAAT PDVHQANMFD MKNIGVATPT LQEWSESKA

Best Arabidopsis Sequence Match ( AT3G16190.1 )
(BLAST)

001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA

Arabidopsis Description

Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.