Factsheet for Solyc03g120540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16190.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT3G16190.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400006782	Potato	cytosol	96.45	96.45
VIT_09s0002g04150.t01	Wine grape	cytosol	72.08	72.82
KRH44327	Soybean	cytosol	73.1	72.36
VIT_09s0002g04140.t01	Wine grape	cytosol	64.97	68.45
AT3G16190.1	Thale cress	cytosol	68.02	68.37
KXG30028	Sorghum	cytosol	65.99	66.67
Os02t0276200-01	Rice	cytosol	59.9	66.29
Os02t0276400-01	Rice	plasma membrane	67.01	65.67
Bra027184.1-P	Field mustard	cytosol	64.47	64.8
CDX97729	Canola	cytosol	64.47	64.47
KRH47257	Soybean	mitochondrion	75.63	56.02
Zm00001d015986_P002	Maize	extracellular	68.53	55.56
KXG30030	Sorghum	extracellular	68.02	54.92
TraesCS7A01G122900.1	Wheat	endoplasmic reticulum, extracellular	67.51	53.63
TraesCS7B01G022000.1	Wheat	endoplasmic reticulum, extracellular	67.01	53.44
TraesCS7D01G121100.1	Wheat	endoplasmic reticulum, extracellular	67.01	53.44
TraesCS4D01G145000.1	Wheat	endoplasmic reticulum, extracellular	64.97	51.61
KRH44325	Soybean	mitochondrion	43.15	44.97
HORVU7Hr1G025910.4	Barley	peroxisome	60.41	37.66
TraesCS1D01G133100.1	Wheat	extracellular, peroxisome, plastid	25.89	30.54
VIT_18s0001g10290.t01	Wine grape	cytosol, peroxisome, plastid	20.3	25.97
HORVU3Hr1G038260.3	Barley	mitochondrion	16.24	16.84
HORVU4Hr1G043950.16	Barley	plastid	21.32	13.29

Protein Annotations

Gene3D:3.40.50.850	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006212	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	InterPro:IPR036380	InterPro:Isochorismatase-like	InterPro:Isochorismatase-like_sf	UniProt:K4BMK3
PFAM:PF00857	PANTHER:PTHR11080	PANTHER:PTHR11080:SF58	SUPFAM:SSF52499	EnsemblPlantsGene:Solyc03g120540.2	EnsemblPlants:Solyc03g120540.2.1
UniParc:UPI0002766D67	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:68909201..68911628

Molecular Weight (calculated)

21674.2 Da

IEP (calculated)

6.111

GRAVY (calculated)

0.046

Length

197 amino acids

Sequence
(BLAST)

001: MGSENGDKWS KTAVVVIDMQ KDFILPDAPM LVRGGEAIVP NVIKTVEVAR NRGIPIIWVV REHDPLGRDV ELFRRHLYGD GKPKPTSKGC VGAELVDGLV
101: IQEGDYKLVK TRFSAFFNTN LHSYLQGIGI TNLVVIGVQT PNCIRQTVFD AVALDYQRVT VIIDATAAAT PDIHIANIFD MKNVGVATPT LEEWCQS

Best Arabidopsis Sequence Match ( AT3G16190.1 )
(BLAST)

001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA

Arabidopsis Description

Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.