Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- peroxisome 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0276400-01 | Rice | plasma membrane | 34.73 | 28.86 |
| Os02t0276200-01 | Rice | cytosol | 30.54 | 28.65 |
| PGSC0003DMT400006782 | Potato | cytosol | 30.54 | 25.89 |
| Solyc03g120540.2.1 | Tomato | cytosol | 30.54 | 25.89 |
| VIT_09s0002g04140.t01 | Wine grape | cytosol | 28.74 | 25.67 |
| VIT_09s0002g04150.t01 | Wine grape | cytosol | 29.94 | 25.64 |
| AT3G16190.1 | Thale cress | cytosol | 29.34 | 25.0 |
| CDX97729 | Canola | cytosol | 28.14 | 23.86 |
| TraesCS4D01G145000.1 | Wheat | endoplasmic reticulum, extracellular | 35.33 | 23.79 |
| KRH44327 | Soybean | cytosol | 28.14 | 23.62 |
| Bra027184.1-P | Field mustard | cytosol | 27.54 | 23.47 |
| TraesCS7D01G121100.1 | Wheat | endoplasmic reticulum, extracellular | 34.13 | 23.08 |
| Zm00001d015986_P002 | Maize | extracellular | 32.34 | 22.22 |
| KXG30030 | Sorghum | extracellular | 32.34 | 22.13 |
| KRH47257 | Soybean | mitochondrion | 30.54 | 19.17 |
| VIT_18s0001g10290.t01 | Wine grape | cytosol, peroxisome, plastid | 14.97 | 16.23 |
| KRH44325 | Soybean | mitochondrion | 7.19 | 6.35 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G133100.1 | EnsemblPlantsGene:TraesCS1D01G133100 | Gene3D:3.40.50.850 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | InterPro:IPR036380 | InterPro:Isochorismatase-like_sf | PANTHER:PTHR11080 | PANTHER:PTHR11080:SF57 | SUPFAM:SSF52499 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:160538797..160540575
Molecular Weight (calculated)
18571.5 Da
IEP (calculated)
8.588
GRAVY (calculated)
0.149
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSRGPNLNG GVIYTQFVCL KDATTCKNNF AGQVVKPLFY CCGIVSLHGA AAWRGGQQRT CEATINTADV LCFPLSFLIN GSLTERSISL GVQTPNCIWR
101: TIYDVVALDY EKVTVFIDAT VVARPNIHLA SIRDMRTIVV ERPTLEEWRR CVARGVFHSW HRSGIHA
101: TIYDVVALDY EKVTVFIDAT VVARPNIHLA SIRDMRTIVV ERPTLEEWRR CVARGVFHSW HRSGIHA
001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
Arabidopsis Description
Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.