CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027184.1-P	Field mustard	cytosol	97.97	98.47
AT3G16190.1	Thale cress	cytosol	87.31	87.76
KRH44327	Soybean	cytosol	72.08	71.36
VIT_09s0002g04150.t01	Wine grape	cytosol	69.54	70.26
Solyc03g120540.2.1	Tomato	cytosol	64.47	64.47
Os02t0276200-01	Rice	cytosol	57.36	63.48
PGSC0003DMT400006782	Potato	cytosol	63.45	63.45
VIT_09s0002g04140.t01	Wine grape	cytosol	59.39	62.57
Os02t0276400-01	Rice	plasma membrane	63.45	62.19
KXG30028	Sorghum	cytosol	59.39	60.0
KRH47257	Soybean	mitochondrion	72.08	53.38
Zm00001d015986_P002	Maize	extracellular	63.45	51.44
KXG30030	Sorghum	extracellular	62.44	50.41
TraesCS7D01G121100.1	Wheat	endoplasmic reticulum, extracellular	62.94	50.2
TraesCS7A01G122900.1	Wheat	endoplasmic reticulum, extracellular	62.44	49.6
TraesCS7B01G022000.1	Wheat	endoplasmic reticulum, extracellular	61.42	48.99
TraesCS4D01G145000.1	Wheat	endoplasmic reticulum, extracellular	59.9	47.58
KRH44325	Soybean	mitochondrion	42.13	43.92
HORVU7Hr1G025910.4	Barley	peroxisome	55.84	34.81
TraesCS1D01G133100.1	Wheat	extracellular, peroxisome, plastid	23.86	28.14
VIT_18s0001g10290.t01	Wine grape	cytosol, peroxisome, plastid	20.3	25.97
HORVU3Hr1G038260.3	Barley	mitochondrion	13.71	14.21
HORVU4Hr1G043950.16	Barley	plastid	17.77	11.08

Protein Annotations

EnsemblPlants:CDX97729	EnsemblPlantsGene:GSBRNA2T00104984001	Gene3D:3.40.50.850	GO:A0A078EAE8	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:IPR036380	InterPro:Isochorismatase-like	InterPro:Isochorismatase-like_sf	PANTHER:PTHR11080
PANTHER:PTHR11080:SF58	PFAM:PF00857	ProteinID:CDX97729	ProteinID:CDX97729.1	SEG:seg	SUPFAM:SSF52499
UniParc:UPI0004EE3D80	MapMan:35.1	:	:	:	:

Description

BnaA05g23500D

Coordinates

chrLK031900:-:1232560..1234046

Molecular Weight (calculated)

22149.6 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.132

Length

197 amino acids

Sequence
(BLAST)

001: MAERWTNTAL LVIDMQQNDF IEEGSVTQVK GGKAIVPNVI RVVELARQRG ILVVWVVREH DPQGRDVEIF RRHHYRSEKV GPVVKGTLGS KLVDGLNMRE
101: EEDYKIVKTR FSAFFGTHLH SFLQTSGITK LVIAGVQTPN CIRQTVFDAV ELDYPDVTVI VDATAAATPE IHTANILDMR NIGVKTPTLH EWSEEFA

Best Arabidopsis Sequence Match ( AT3G16190.1 )
(BLAST)

001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA

Arabidopsis Description

Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.