Factsheet for VIT_09s0002g04150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04140.t01	Wine grape	cytosol	75.38	78.61
KRH44327	Soybean	cytosol	76.92	75.38
Solyc03g120540.2.1	Tomato	cytosol	72.82	72.08
Bra027184.1-P	Field mustard	cytosol	70.77	70.41
AT3G16190.1	Thale cress	cytosol	70.77	70.41
Os02t0276200-01	Rice	cytosol	63.59	69.66
PGSC0003DMT400006782	Potato	cytosol	70.26	69.54
CDX97729	Canola	cytosol	70.26	69.54
Os02t0276400-01	Rice	plasma membrane	67.18	65.17
KXG30028	Sorghum	cytosol	64.62	64.62
KRH47257	Soybean	mitochondrion	78.97	57.89
Zm00001d015986_P002	Maize	extracellular	69.23	55.56
KXG30030	Sorghum	extracellular	68.21	54.51
TraesCS7D01G121100.1	Wheat	endoplasmic reticulum, extracellular	68.21	53.85
TraesCS7A01G122900.1	Wheat	endoplasmic reticulum, extracellular	67.69	53.23
TraesCS7B01G022000.1	Wheat	endoplasmic reticulum, extracellular	67.18	53.04
TraesCS4D01G145000.1	Wheat	endoplasmic reticulum, extracellular	66.15	52.02
KRH44325	Soybean	mitochondrion	45.13	46.56
HORVU7Hr1G025910.4	Barley	peroxisome	61.03	37.66
VIT_18s0001g10290.t01	Wine grape	cytosol, peroxisome, plastid	24.1	30.52
TraesCS1D01G133100.1	Wheat	extracellular, peroxisome, plastid	25.64	29.94
HORVU3Hr1G038260.3	Barley	mitochondrion	15.38	15.79
HORVU4Hr1G043950.16	Barley	plastid	20.0	12.34

Protein Annotations

EntrezGene:100242883	wikigene:100242883	Gene3D:3.40.50.850	MapMan:35.1	ProteinID:CCB59460	ProteinID:CCB59460.1
UniProt:F6HYD7	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006212	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	InterPro:IPR036380	InterPro:Isochorismatase-like	InterPro:Isochorismatase-like_sf	EntrezGene:LOC100242883
wikigene:LOC100242883	PFAM:PF00857	PANTHER:PTHR11080	PANTHER:PTHR11080:SF58	SUPFAM:SSF52499	UniParc:UPI0001983FFB
ArrayExpress:VIT_09s0002g04150	EnsemblPlantsGene:VIT_09s0002g04150	EnsemblPlants:VIT_09s0002g04150.t01	RefSeq:XP_002284348	RefSeq:XP_002284348.1	SEG:seg

Description

No Description!

Coordinates

chr9:-:3817327..3819833

Molecular Weight (calculated)

21359.6 Da

IEP (calculated)

6.241

GRAVY (calculated)

0.081

Length

195 amino acids

Sequence
(BLAST)

001: MANTRKHTAL LVIDMQKDFV EEDGLTRVDG GKAIVPSVIK AVEVARELGI FVVWVVREHD PLGRDVELFR RHFYGPGKIG PVSEGSVGAE LVDGLVIKEG
101: DYKLVKTRFS AFFATHLHSF LQSNGINSVV IVGVQTPNCI RQTVFDAVAL DYQSVTVIVD ATAAATPDIH FANVRDMKNV GVATPTLQEW RESNA

Best Arabidopsis Sequence Match ( AT3G16190.1 )
(BLAST)

001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA

Arabidopsis Description

Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.