CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16190.1	KRH10294	AT3G46090.1	17259181
AT3G16190.1	KRH23029	AT3G46090.1	17259181
AT3G16190.1	KRH24840	AT3G46090.1	17259181
AT3G16190.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44325	Soybean	mitochondrion	65.04	91.53
KRH44327	Soybean	cytosol	66.17	88.44
VIT_09s0002g04150.t01	Wine grape	cytosol	57.89	78.97
Solyc03g120540.2.1	Tomato	cytosol	56.02	75.63
PGSC0003DMT400006782	Potato	cytosol	54.89	74.11
Bra027184.1-P	Field mustard	cytosol	53.76	72.96
AT3G16190.1	Thale cress	cytosol	53.38	72.45
CDX97729	Canola	cytosol	53.38	72.08
VIT_09s0002g04140.t01	Wine grape	cytosol	49.62	70.59
Os02t0276200-01	Rice	cytosol	45.49	67.98
KXG30028	Sorghum	cytosol	49.25	67.18
Os02t0276400-01	Rice	plasma membrane	50.0	66.17
Zm00001d015986_P002	Maize	extracellular	52.26	57.2
KXG30030	Sorghum	extracellular	52.26	56.97
TraesCS7A01G122900.1	Wheat	endoplasmic reticulum, extracellular	52.63	56.45
TraesCS7D01G121100.1	Wheat	endoplasmic reticulum, extracellular	52.26	56.28
TraesCS7B01G022000.1	Wheat	endoplasmic reticulum, extracellular	51.5	55.47
TraesCS4D01G145000.1	Wheat	endoplasmic reticulum, extracellular	51.13	54.84
HORVU7Hr1G025910.4	Barley	peroxisome	48.12	40.51
TraesCS1D01G133100.1	Wheat	extracellular, peroxisome, plastid	19.17	30.54
VIT_18s0001g10290.t01	Wine grape	cytosol, peroxisome, plastid	15.79	27.27
HORVU3Hr1G038260.3	Barley	mitochondrion	15.41	21.58
HORVU4Hr1G043950.16	Barley	plastid	17.67	14.87

Protein Annotations

EntrezGene:100527482	Gene3D:3.40.50.850	MapMan:35.1	EMBL:ACUP02004142	EnsemblPlantsGene:GLYMA_07G018600	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006212	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	UniProt:I1KGM0
InterPro:IPR036380	InterPro:Isochorismatase-like	InterPro:Isochorismatase-like_sf	EnsemblPlants:KRH47257	ProteinID:KRH47257	ProteinID:KRH47257.1
PFAM:PF00857	PANTHER:PTHR11080	PANTHER:PTHR11080:SF58	SUPFAM:SSF52499	UniParc:UPI00023C7058	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:1481386..1484350

Molecular Weight (calculated)

29214.3 Da

IEP (calculated)

8.969

GRAVY (calculated)

-0.056

Length

266 amino acids

Sequence
(BLAST)

001: MVKTVVWSTF VRPQYKPAHF NHSPLPFLKL STPNLSFRGT NTVHNKRSNW PKPLSLRSKS VLAVAGADPL EMAEDWNRTA LLVIDMQKDF IEDGGPMLVK
101: GGKDIVPNVI KAVDVARQRG ILIVWVVREH DPLGRDVELF RRHLYAAGKV GPTSKGSEGA ELVDGLVIKE GDYKLVKTRF SAFFATHLHS VLQGAGINSL
201: VVTGVQTPNC IRQTVYDAVA LDYQPVTVIV DATAAATPDI HLANVFDMEN IGVATPTLQE WSEPKA

Best Arabidopsis Sequence Match ( AT3G16190.1 )
(BLAST)

001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA

Arabidopsis Description

Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.