Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G043950.16 | Barley | plastid | 51.58 | 31.01 |
| Zm00001d015986_P002 | Maize | extracellular | 28.42 | 22.22 |
| KXG30030 | Sorghum | extracellular | 28.42 | 22.13 |
| Os02t0276400-01 | Rice | plasma membrane | 22.63 | 21.39 |
| TraesCS4D01G145000.1 | Wheat | endoplasmic reticulum, extracellular | 27.89 | 21.37 |
| KRH44325 | Soybean | mitochondrion | 20.0 | 20.11 |
| HORVU7Hr1G025910.4 | Barley | peroxisome | 31.58 | 18.99 |
| Solyc03g120540.2.1 | Tomato | cytosol | 16.84 | 16.24 |
| KRH44327 | Soybean | cytosol | 16.32 | 15.58 |
| KRH47257 | Soybean | mitochondrion | 21.58 | 15.41 |
| VIT_09s0002g04150.t01 | Wine grape | cytosol | 15.79 | 15.38 |
| PGSC0003DMT400006782 | Potato | cytosol | 15.79 | 15.23 |
| Os02t0276200-01 | Rice | cytosol | 13.16 | 14.04 |
| Bra027184.1-P | Field mustard | cytosol | 14.21 | 13.78 |
| CDX97729 | Canola | cytosol | 14.21 | 13.71 |
| VIT_09s0002g04140.t01 | Wine grape | cytosol | 12.11 | 12.3 |
| AT3G16190.1 | Thale cress | cytosol | 12.63 | 12.24 |
| VIT_18s0001g10290.t01 | Wine grape | cytosol, peroxisome, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G038260.3 | EnsemblPlantsGene:HORVU3Hr1G038260 | Gene3D:3.40.50.850 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | InterPro:IPR036380 | InterPro:Isochorismatase-like | InterPro:Isochorismatase-like_sf | PANTHER:PTHR33207 | PANTHER:PTHR33207:SF22 |
| PFAM:PF00857 | SEG:seg | SUPFAM:SSF52499 | UniParc:UPI000B47EFA9 | UniProt:A0A287KT84 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr3H:-:220665028..220667961
Molecular Weight (calculated)
20863.5 Da
IEP (calculated)
10.441
GRAVY (calculated)
-0.105
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: LRASDPVFLR HFRDRNPPRV LGVCVGYSMR PYKFMPLPQP PGLAALSRRA ASSCADAFAR GGQRIEHCRN DRLIVESLRK GTFKHSVLAP LLSGEPEVVL
101: PPIPPPGRQH NRRIPTSPFR PHRPMAAPGK WSETTMLVID MQKDFLDTAM CSPVLVAGGE AAVPAVVEAV DVAWERGIFV VWVQQLSAAG
101: PPIPPPGRQH NRRIPTSPFR PHRPMAAPGK WSETTMLVID MQKDFLDTAM CSPVLVAGGE AAVPAVVEAV DVAWERGIFV VWVQQLSAAG
001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
Arabidopsis Description
Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.