Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 3
- peroxisome 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0276200-01 | Rice | cytosol | 70.65 | 79.78 |
| Zm00001d015986_P002 | Maize | extracellular | 87.06 | 72.02 |
| KXG30030 | Sorghum | extracellular | 87.06 | 71.72 |
| VIT_09s0002g04150.t01 | Wine grape | cytosol | 65.17 | 67.18 |
| Solyc03g120540.2.1 | Tomato | cytosol | 65.67 | 67.01 |
| TraesCS7B01G022000.1 | Wheat | endoplasmic reticulum, extracellular | 82.09 | 66.8 |
| TraesCS7A01G122900.1 | Wheat | endoplasmic reticulum, extracellular | 81.59 | 66.13 |
| PGSC0003DMT400006782 | Potato | cytosol | 63.18 | 64.47 |
| Bra027184.1-P | Field mustard | cytosol | 62.19 | 63.78 |
| CDX97729 | Canola | cytosol | 62.19 | 63.45 |
| KRH44327 | Soybean | cytosol | 62.69 | 63.32 |
| AT3G16190.1 | Thale cress | cytosol | 61.19 | 62.76 |
| VIT_09s0002g04140.t01 | Wine grape | cytosol | 57.71 | 62.03 |
| KRH47257 | Soybean | mitochondrion | 66.17 | 50.0 |
| HORVU7Hr1G025910.4 | Barley | peroxisome | 73.63 | 46.84 |
| KRH44325 | Soybean | mitochondrion | 38.81 | 41.27 |
| TraesCS1D01G133100.1 | Wheat | extracellular, peroxisome, plastid | 28.86 | 34.73 |
| VIT_18s0001g10290.t01 | Wine grape | cytosol, peroxisome, plastid | 18.91 | 24.68 |
| HORVU3Hr1G038260.3 | Barley | mitochondrion | 21.39 | 22.63 |
| HORVU4Hr1G043950.16 | Barley | plastid | 26.37 | 16.77 |
Protein Annotations
| Gene3D:3.40.50.850 | MapMan:35.1 | UniProt:A0A0P0VHG4 | ProteinID:BAS78093.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006212 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036380 |
| InterPro:Isochorismatase-like | InterPro:Isochorismatase-like_sf | EnsemblPlantsGene:Os02g0276400 | EnsemblPlants:Os02t0276400-01 | PFAM:PF00857 | PANTHER:PTHR11080 |
| PANTHER:PTHR11080:SF57 | SUPFAM:SSF52499 | UniParc:UPI000224C8FF | SEG:seg | : | : |
Description
Similar to Isochorismatase family protein rutB. (Os02t0276400-01)
Coordinates
chr2:-:10152183..10155192
Molecular Weight (calculated)
21749.4 Da
IEP (calculated)
8.430
GRAVY (calculated)
0.026
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAGGGG AKWSETAMLV IDMQKDFVDP AMRSPMLVDG GQAVVPTVAE AVAVARERGI YVVWVVREHD PSGADVEIFR RRYYSGGKGP TVKGLKGADL
101: ADGLVIKEGE YKLVKTRFSA FFATPLDSVL KTSGIKKLVI VGVQTPNCIR QTVFDAVALD YEKVTVIIDA TAAARPEIHL SNIRDMKNIG VETPTLEEWR
201: R
101: ADGLVIKEGE YKLVKTRFSA FFATPLDSVL KTSGIKKLVI VGVQTPNCIR QTVFDAVALD YEKVTVIIDA TAAARPEIHL SNIRDMKNIG VETPTLEEWR
201: R
001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
Arabidopsis Description
Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.