Factsheet for Zm00001d015986_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	peroxisome, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30030	Sorghum	extracellular	91.77	91.39
Os02t0276400-01	Rice	plasma membrane	72.02	87.06
TraesCS7B01G022000.1	Wheat	endoplasmic reticulum, extracellular	84.77	83.4
TraesCS7A01G122900.1	Wheat	endoplasmic reticulum, extracellular	84.36	82.66
Os02t0276200-01	Rice	cytosol	59.67	81.46
VIT_09s0002g04150.t01	Wine grape	cytosol	55.56	69.23
Solyc03g120540.2.1	Tomato	cytosol	55.56	68.53
KRH44327	Soybean	cytosol	54.73	66.83
PGSC0003DMT400006782	Potato	cytosol	53.5	65.99
Bra027184.1-P	Field mustard	cytosol	51.85	64.29
CDX97729	Canola	cytosol	51.44	63.45
AT3G16190.1	Thale cress	cytosol	51.03	63.27
VIT_09s0002g04140.t01	Wine grape	cytosol	48.15	62.57
HORVU7Hr1G025910.4	Barley	peroxisome	78.19	60.13
KRH47257	Soybean	mitochondrion	57.2	52.26
KRH44325	Soybean	mitochondrion	35.39	45.5
TraesCS1D01G133100.1	Wheat	extracellular, peroxisome, plastid	22.22	32.34
HORVU3Hr1G038260.3	Barley	mitochondrion	22.22	28.42
VIT_18s0001g10290.t01	Wine grape	cytosol, peroxisome, plastid	15.23	24.03
HORVU4Hr1G043950.16	Barley	plastid	23.87	18.35

Protein Annotations

EnsemblPlants:Zm00001d015986_P002	EnsemblPlants:Zm00001d015986_T002	EnsemblPlantsGene:Zm00001d015986	Gene3D:3.40.50.850	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:IPR036380	InterPro:Isochorismatase-like	InterPro:Isochorismatase-like_sf	PANTHER:PTHR11080
PANTHER:PTHR11080:SF57	PFAM:PF00857	ProteinID:AQK69863.1	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF52499
UniParc:UPI000220CDAA	UniProt:A0A1D6H4W4	MapMan:35.1	:	:	:

Description

pco137163Isochorismatase family protein rutB

Coordinates

chr5:+:136921862..136930137

Molecular Weight (calculated)

26778.8 Da

IEP (calculated)

10.167

GRAVY (calculated)

0.059

Length

243 amino acids

Sequence
(BLAST)

001: MPSHLALLSC LLVLLLSFDK FLFHYLKRRW FSGGSGATVP RPPAKSRRNM AAAKWSETAM LVIDMQKDFV DPAMRSPMLV AGGEAVVPAV AGAVAVARER
101: GIFVVWVVRE HDPSGRDVEL FRRHHYSGGK GPTVKGLKGA ELADGLVIKE GEYKLVKTRF SAFFATHLDS VLKTAGIKNL VIVGVQTPNC IRQTVFDAIA
201: LDYEKVTVLI DATAAARPEI HLSNIRDMKN IGVDTPTLEE WRR

Best Arabidopsis Sequence Match ( AT3G16190.1 )
(BLAST)

001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA

Arabidopsis Description

Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.