Factsheet for VIT_09s0002g04140.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
peroxisome 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	peroxisome
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04150.t01	Wine grape	cytosol	78.61	75.38
KRH44327	Soybean	cytosol	72.19	67.84
Solyc03g120540.2.1	Tomato	cytosol	68.45	64.97
Os02t0276200-01	Rice	cytosol	60.43	63.48
PGSC0003DMT400006782	Potato	cytosol	66.31	62.94
Bra027184.1-P	Field mustard	cytosol	62.57	59.69
KXG30028	Sorghum	cytosol	62.03	59.49
CDX97729	Canola	cytosol	62.57	59.39
AT3G16190.1	Thale cress	cytosol	61.5	58.67
Os02t0276400-01	Rice	plasma membrane	62.03	57.71
KRH47257	Soybean	mitochondrion	70.59	49.62
Zm00001d015986_P002	Maize	extracellular	62.57	48.15
TraesCS7A01G122900.1	Wheat	endoplasmic reticulum, extracellular	63.64	47.98
TraesCS7D01G121100.1	Wheat	endoplasmic reticulum, extracellular	63.1	47.77
KXG30030	Sorghum	extracellular	62.03	47.54
TraesCS7B01G022000.1	Wheat	endoplasmic reticulum, extracellular	62.57	47.37
TraesCS4D01G145000.1	Wheat	endoplasmic reticulum, extracellular	62.03	46.77
KRH44325	Soybean	mitochondrion	37.97	37.57
HORVU7Hr1G025910.4	Barley	peroxisome	56.68	33.54
TraesCS1D01G133100.1	Wheat	extracellular, peroxisome, plastid	25.67	28.74
VIT_18s0001g10290.t01	Wine grape	cytosol, peroxisome, plastid	23.53	28.57
HORVU3Hr1G038260.3	Barley	mitochondrion	12.3	12.11
HORVU4Hr1G043950.16	Barley	plastid	15.51	9.18

Protein Annotations

EntrezGene:100265171	wikigene:100265171	Gene3D:3.40.50.850	MapMan:35.1	ProteinID:CCB59459	ProteinID:CCB59459.1
UniProt:F6HYD6	EMBL:FN596494	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006212	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	InterPro:IPR036380	InterPro:Isochorismatase-like	InterPro:Isochorismatase-like_sf	EntrezGene:LOC100265171
wikigene:LOC100265171	PFAM:PF00857	PANTHER:PTHR11080	PANTHER:PTHR11080:SF58	SUPFAM:SSF52499	UniParc:UPI000210A778
ArrayExpress:VIT_09s0002g04140	EnsemblPlantsGene:VIT_09s0002g04140	EnsemblPlants:VIT_09s0002g04140.t01	RefSeq:XP_002284352	RefSeq:XP_002284352.1	SEG:seg

Description

No Description!

Coordinates

chr9:-:3809451..3816881

Molecular Weight (calculated)

20252.4 Da

IEP (calculated)

6.515

GRAVY (calculated)

0.080

Length

187 amino acids

Sequence
(BLAST)

001: MFFVGLGKKD FLDEDRPISL EGGKAIIPSA IKAVEVAREL GILVVWVVRE HDPQGRDVEV FRRNFYGPGK LSPATKGSEG AELIDGLAIK EGDYKLVKTR
101: FSAFFATHLH SLLQSNGINS VVVVGVQTPN CIRQTAFDAV SLDYQSVTVI VDATAAATPD IHLANILDMK NVGVATPTLQ KWCQSNA

Best Arabidopsis Sequence Match ( AT3G16190.1 )
(BLAST)

001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA

Arabidopsis Description

Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.