Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G121100.1 | Wheat | endoplasmic reticulum, extracellular | 89.92 | 90.28 |
| VIT_09s0002g04150.t01 | Wine grape | cytosol | 52.02 | 66.15 |
| Solyc03g120540.2.1 | Tomato | cytosol | 51.61 | 64.97 |
| PGSC0003DMT400006782 | Potato | cytosol | 50.4 | 63.45 |
| KRH44327 | Soybean | cytosol | 50.81 | 63.32 |
| VIT_09s0002g04140.t01 | Wine grape | cytosol | 46.77 | 62.03 |
| AT3G16190.1 | Thale cress | cytosol | 48.39 | 61.22 |
| Bra027184.1-P | Field mustard | cytosol | 47.58 | 60.2 |
| CDX97729 | Canola | cytosol | 47.58 | 59.9 |
| KRH47257 | Soybean | mitochondrion | 54.84 | 51.13 |
| KRH44325 | Soybean | mitochondrion | 32.66 | 42.86 |
| TraesCS1D01G133100.1 | Wheat | extracellular, peroxisome, plastid | 23.79 | 35.33 |
| HORVU3Hr1G038260.3 | Barley | mitochondrion | 21.37 | 27.89 |
| VIT_18s0001g10290.t01 | Wine grape | cytosol, peroxisome, plastid | 14.52 | 23.38 |
| HORVU4Hr1G043950.16 | Barley | plastid | 23.79 | 18.67 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G145000.1 | EnsemblPlantsGene:TraesCS4D01G145000 | Gene3D:3.40.50.850 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | InterPro:IPR036380 | InterPro:Isochorismatase-like | InterPro:Isochorismatase-like_sf | PANTHER:PTHR11080 | PANTHER:PTHR11080:SF57 |
| PFAM:PF00857 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF52499 | TIGR:cd00431 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4D:+:133727396..133730590
Molecular Weight (calculated)
27197.5 Da
IEP (calculated)
9.816
GRAVY (calculated)
0.187
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSHLALLSC LLVLVLSLDK FLLPYLRKRW LSGGGVAAII PRIPTSHFKS QRSMAAAAQW SETTMLVIDM QKDFVDPAMG SPLLVAGGEA VIPAVAEAVA
101: VARKRGIFVV WVVREHDPSG RDVELFRRHL YSGGKGPTVK GLKGAELADG LFIKEGDYKL VKTRFSAFFA THLDSVLKTL GMKNLVIVGV QTPNCIRQTV
201: YDAVALDYEK VMVLTDATAA ARPDIHLASI RDMKTIGVET PTLEEWRR
101: VARKRGIFVV WVVREHDPSG RDVELFRRHL YSGGKGPTVK GLKGAELADG LFIKEGDYKL VKTRFSAFFA THLDSVLKTL GMKNLVIVGV QTPNCIRQTV
201: YDAVALDYEK VMVLTDATAA ARPDIHLASI RDMKTIGVET PTLEEWRR
001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
Arabidopsis Description
Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.