Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g120540.2.1 | Tomato | cytosol | 96.45 | 96.45 |
| KRH44327 | Soybean | cytosol | 71.07 | 70.35 |
| VIT_09s0002g04150.t01 | Wine grape | cytosol | 69.54 | 70.26 |
| AT3G16190.1 | Thale cress | cytosol | 68.53 | 68.88 |
| VIT_09s0002g04140.t01 | Wine grape | cytosol | 62.94 | 66.31 |
| Os02t0276200-01 | Rice | cytosol | 58.88 | 65.17 |
| KXG30028 | Sorghum | cytosol | 63.96 | 64.62 |
| Bra027184.1-P | Field mustard | cytosol | 63.45 | 63.78 |
| CDX97729 | Canola | cytosol | 63.45 | 63.45 |
| Os02t0276400-01 | Rice | plasma membrane | 64.47 | 63.18 |
| KRH47257 | Soybean | mitochondrion | 74.11 | 54.89 |
| Zm00001d015986_P002 | Maize | extracellular | 65.99 | 53.5 |
| KXG30030 | Sorghum | extracellular | 65.99 | 53.28 |
| TraesCS7A01G122900.1 | Wheat | endoplasmic reticulum, extracellular | 65.48 | 52.02 |
| TraesCS7B01G022000.1 | Wheat | endoplasmic reticulum, extracellular | 64.97 | 51.82 |
| TraesCS7D01G121100.1 | Wheat | endoplasmic reticulum, extracellular | 64.97 | 51.82 |
| TraesCS4D01G145000.1 | Wheat | endoplasmic reticulum, extracellular | 63.45 | 50.4 |
| KRH44325 | Soybean | mitochondrion | 42.64 | 44.44 |
| HORVU7Hr1G025910.4 | Barley | peroxisome | 58.38 | 36.39 |
| TraesCS1D01G133100.1 | Wheat | extracellular, peroxisome, plastid | 25.89 | 30.54 |
| VIT_18s0001g10290.t01 | Wine grape | cytosol, peroxisome, plastid | 19.29 | 24.68 |
| HORVU3Hr1G038260.3 | Barley | mitochondrion | 15.23 | 15.79 |
| HORVU4Hr1G043950.16 | Barley | plastid | 20.3 | 12.66 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400006782 | EnsemblPlantsGene:PGSC0003DMG400002629 | EntrezGene:102594407 | Gene3D:3.40.50.850 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:IPR036380 | InterPro:Isochorismatase-like | InterPro:Isochorismatase-like_sf | PANTHER:PTHR11080 |
| PANTHER:PTHR11080:SF58 | PFAM:PF00857 | PGSC:PGSC0003DMG400002629 | RefSeq:XP_006343089.1 | SEG:seg | SUPFAM:SSF52499 |
| UniParc:UPI0002951E22 | UniProt:M0ZRY7 | MapMan:35.1 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002629]
Coordinates
chr3:+:59947449..59949846
Molecular Weight (calculated)
21771.4 Da
IEP (calculated)
6.513
GRAVY (calculated)
0.036
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTENGDKWR KTAVVVIDMQ KDFILPGAPM LVRDGEAIVP NVIKTVEVAR NRGIPIIWVV REHDPLGRDV ELFRRHLYGD GKPKPTSKGC VGAELVDGLL
101: IQEGDYKLVK TRFSAFFNTN LHSYLQGIAV TNLVVIGVQT PNCIRQTVFD AVALDYQRVT VIIDATAAAT PDIHIANIFD MKNVGVATPT LEEWCQS
101: IQEGDYKLVK TRFSAFFNTN LHSYLQGIAV TNLVVIGVQT PNCIRQTVFD AVALDYQRVT VIIDATAAAT PDIHIANIFD MKNVGVATPT LEEWCQS
001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
Arabidopsis Description
Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.