Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- peroxisome 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os02t0276400-01 | Rice | plasma membrane | 79.78 | 70.65 |
VIT_09s0002g04150.t01 | Wine grape | cytosol | 69.66 | 63.59 |
KRH44327 | Soybean | cytosol | 69.66 | 62.31 |
VIT_09s0002g04140.t01 | Wine grape | cytosol | 63.48 | 60.43 |
Solyc03g120540.2.1 | Tomato | cytosol | 66.29 | 59.9 |
Zm00001d015986_P002 | Maize | extracellular | 81.46 | 59.67 |
KXG30030 | Sorghum | extracellular | 80.9 | 59.02 |
PGSC0003DMT400006782 | Potato | cytosol | 65.17 | 58.88 |
Bra027184.1-P | Field mustard | cytosol | 64.04 | 58.16 |
AT3G16190.1 | Thale cress | cytosol | 63.48 | 57.65 |
TraesCS7B01G022000.1 | Wheat | endoplasmic reticulum, extracellular | 79.78 | 57.49 |
CDX97729 | Canola | cytosol | 63.48 | 57.36 |
TraesCS7A01G122900.1 | Wheat | endoplasmic reticulum, extracellular | 79.78 | 57.26 |
KRH47257 | Soybean | mitochondrion | 67.98 | 45.49 |
HORVU7Hr1G025910.4 | Barley | peroxisome | 71.35 | 40.19 |
KRH44325 | Soybean | mitochondrion | 37.64 | 35.45 |
TraesCS1D01G133100.1 | Wheat | extracellular, peroxisome, plastid | 28.65 | 30.54 |
VIT_18s0001g10290.t01 | Wine grape | cytosol, peroxisome, plastid | 21.35 | 24.68 |
HORVU3Hr1G038260.3 | Barley | mitochondrion | 14.04 | 13.16 |
HORVU4Hr1G043950.16 | Barley | plastid | 19.1 | 10.76 |
Protein Annotations
Gene3D:3.40.50.850 | MapMan:35.1 | UniProt:A0A0P0VHI0 | ProteinID:BAS78092.1 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006212 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | InterPro:IPR036380 |
InterPro:Isochorismatase-like | InterPro:Isochorismatase-like_sf | EnsemblPlantsGene:Os02g0276200 | EnsemblPlants:Os02t0276200-01 | PFAM:PF00857 | PANTHER:PTHR11080 |
PANTHER:PTHR11080:SF57 | SUPFAM:SSF52499 | UniParc:UPI000393C45C | SEG:seg | : | : |
Description
Similar to Isochorismatase family protein rutB. (Os02t0276200-01)
Coordinates
chr2:-:10135285..10143931
Molecular Weight (calculated)
19358.3 Da
IEP (calculated)
6.960
GRAVY (calculated)
0.062
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MQKDFVDPAT SSAALLAGEA ILPTVTAAVA VARQRGIFIV WVVREHDPSG RDVELFRRHF YSSGKGLGVE GSKGAELADG LTIKDGDYKL VKTRFSAFFA
101: THLDSVLKTS GIKNLVIVGV QTPNCIRQTV FDAVALDYDK VAVIIDATAA AKPEIHLSNM IDMKNIGVET PTLEEWRR
101: THLDSVLKTS GIKNLVIVGV QTPNCIRQTV FDAVALDYDK VAVIIDATAA AKPEIHLSNM IDMKNIGVET PTLEEWRR
001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA
Arabidopsis Description
Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.