Factsheet for VIT_18s0001g10290.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
peroxisome 1
extracellular 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04150.t01	Wine grape	cytosol	30.52	24.1
VIT_09s0002g04140.t01	Wine grape	cytosol	28.57	23.53
Os02t0276200-01	Rice	cytosol	24.68	21.35
KRH44327	Soybean	cytosol	27.27	21.11
Bra027184.1-P	Field mustard	cytosol	25.97	20.41
CDX97729	Canola	cytosol	25.97	20.3
Solyc03g120540.2.1	Tomato	cytosol	25.97	20.3
KXG30028	Sorghum	cytosol	24.68	19.49
AT3G16190.1	Thale cress	cytosol	24.68	19.39
PGSC0003DMT400006782	Potato	cytosol	24.68	19.29
Os02t0276400-01	Rice	plasma membrane	24.68	18.91
KRH47257	Soybean	mitochondrion	27.27	15.79
Zm00001d015986_P002	Maize	extracellular	24.03	15.23
KXG30030	Sorghum	extracellular	24.03	15.16
TraesCS1D01G133100.1	Wheat	extracellular, peroxisome, plastid	16.23	14.97
TraesCS4D01G145000.1	Wheat	endoplasmic reticulum, extracellular	23.38	14.52
TraesCS7B01G022000.1	Wheat	endoplasmic reticulum, extracellular	22.73	14.17
TraesCS7D01G121100.1	Wheat	endoplasmic reticulum, extracellular	22.73	14.17
TraesCS7A01G122900.1	Wheat	endoplasmic reticulum, extracellular	22.73	14.11
HORVU7Hr1G025910.4	Barley	peroxisome	19.48	9.49
KRH44325	Soybean	mitochondrion	3.9	3.17
HORVU4Hr1G043950.16	Barley	plastid	5.84	2.85
HORVU3Hr1G038260.3	Barley	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:3.40.50.850	MapMan:35.1	ProteinID:CCB45829	ProteinID:CCB45829.1	UniProt:F6H1C0	EMBL:FN595227
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006212	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
InterPro:IPR036380	InterPro:Isochorismatase-like	InterPro:Isochorismatase-like_sf	PFAM:PF00857	PANTHER:PTHR11080	PANTHER:PTHR11080:SF58
SUPFAM:SSF52499	UniParc:UPI000210A93D	ArrayExpress:VIT_18s0001g10290	EnsemblPlantsGene:VIT_18s0001g10290	EnsemblPlants:VIT_18s0001g10290.t01	:

Description

No Description!

Coordinates

chr18:-:8617092..8617572

Molecular Weight (calculated)

17131.6 Da

IEP (calculated)

5.137

GRAVY (calculated)

-0.009

Length

154 amino acids

Sequence
(BLAST)

001: MIKEGDYKLV RTGFSASFAT HLHSFLQSNG INIIVGVQTP NCIRQMVFGA VALDYQSVTV IVDAKDCFPT TMPSLSALIL QTSGCQGILL SPPTVPWMSR
101: PLNYDVCCTF PFLDMLVEYR KYGGMDSNTT RAAENTPAAI EERGTEWLEE WPKR

Best Arabidopsis Sequence Match ( AT3G16190.1 )
(BLAST)

001: MAERWRNTAL LVIDMQNDFI EEGAVTQVKG GKSIVPNVIR VVELARQRGI LVIWVVREHD RQGRDVELFR RHNYSSEKVG PVIKGTVGAE LVDGLMINEE
101: DDYKIVKTRF SAFFSTNLHS FLQTSGVTKL VIAGVQTPNC IRQTVFDAVA LDYPNVTVIT DATAAATPEI HTANILDMKN IGVKTPTLHE WSEELA

Arabidopsis Description

Probable inactive nicotinamidase At3g16190 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.