CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16190.1	KRH10294	AT3G46090.1	17259181
AT3G16190.1	KRH23029	AT3G46090.1	17259181
AT3G16190.1	KRH24840	AT3G46090.1	17259181
AT3G16190.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47257	Soybean	mitochondrion	91.53	65.04
KRH44327	Soybean	cytosol	55.03	52.26
VIT_09s0002g04150.t01	Wine grape	cytosol	46.56	45.13
Solyc03g120540.2.1	Tomato	cytosol	44.97	43.15
Bra027184.1-P	Field mustard	cytosol	44.44	42.86
PGSC0003DMT400006782	Potato	cytosol	44.44	42.64
AT3G16190.1	Thale cress	cytosol	43.92	42.35
CDX97729	Canola	cytosol	43.92	42.13
Os02t0276400-01	Rice	plasma membrane	41.27	38.81
VIT_09s0002g04140.t01	Wine grape	cytosol	37.57	37.97
Os02t0276200-01	Rice	cytosol	35.45	37.64
KXG30028	Sorghum	cytosol	38.1	36.92
Zm00001d015986_P002	Maize	extracellular	45.5	35.39
KXG30030	Sorghum	extracellular	44.97	34.84
TraesCS7D01G121100.1	Wheat	endoplasmic reticulum, extracellular	44.44	34.01
TraesCS7A01G122900.1	Wheat	endoplasmic reticulum, extracellular	44.44	33.87
TraesCS7B01G022000.1	Wheat	endoplasmic reticulum, extracellular	43.92	33.6
TraesCS4D01G145000.1	Wheat	endoplasmic reticulum, extracellular	42.86	32.66
HORVU7Hr1G025910.4	Barley	peroxisome	44.44	26.58
HORVU3Hr1G038260.3	Barley	mitochondrion	20.11	20.0
HORVU4Hr1G043950.16	Barley	plastid	19.05	11.39
TraesCS1D01G133100.1	Wheat	extracellular, peroxisome, plastid	6.35	7.19
VIT_18s0001g10290.t01	Wine grape	cytosol, peroxisome, plastid	3.17	3.9

Protein Annotations

EMBL:ACUP02004927	EnsemblPlants:KRH44325	EnsemblPlantsGene:GLYMA_08G203700	Gene3D:3.40.50.850	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:IPR036380	InterPro:Isochorismatase-like	InterPro:Isochorismatase-like_sf	PANTHER:PTHR11080
PANTHER:PTHR11080:SF58	PFAM:PF00857	ProteinID:KRH44325	ProteinID:KRH44325.1	SEG:seg	SUPFAM:SSF52499
UniParc:UPI0006EDCBEA	UniProt:A0A0R0IVG9	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:16520461..16524120

Molecular Weight (calculated)

21265.8 Da

IEP (calculated)

10.399

GRAVY (calculated)

-0.255

Length

189 amino acids

Sequence
(BLAST)

001: MVKTAVWSTF VRPQYKPAHF NLLPLPFLKL NSSNWSFRGT NTVHNKRPNW PKPLSLRSKS ALAVAGADPL EMAEDWNRTA LLVIDMQKDF IEDGRPMLVK
101: GGKYIVPNVI KAVDVARQRG ILIVWVVREH DPLGTDVELF RRHHYAAGKV GPTSKGSEGA ELVDGLVIKE GDYKLEKTRL SAFFATHLH

Best Arabidopsis Sequence Match ( AT2G11626.1 )
(BLAST)

001: MAQLSLLIGP GLFFIPLYQF QSDCCSVSLF CVAKASTREI YLLISFWQGN FCPGYSRVSY LKPSTDLKPI TTSVTSSCRI MLSYRATRTF LCDPELYSQP
101: LFRIGNIGFN HHSKSLGLKK TDFHWSLFNP SSPFPLNLKF HQVLTNDFKD PLHENRRWKK SGIMIPPPRS DLPIEFTRLQ KKGIMIPHQT SGYSTLCPNV
201: LAAFCVDEHR GTGLFLNVIL SLFDSDYLII LRLVRGRVFD TL

Arabidopsis Description

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT2G04378.2); Has 30201 Blast hits to 17322 prot /.../n 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G11626]
SUBAcon: [plasma membrane,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.