Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400040207 | Potato | nucleus | 89.61 | 84.15 |
| Solyc06g075780.1.1 | Tomato | nucleus | 52.6 | 52.6 |
| Bra020284.1-P | Field mustard | nucleus | 33.77 | 46.43 |
| KRH23029 | Soybean | nucleus | 48.05 | 43.27 |
| Solyc05g054650.1.1 | Tomato | plastid | 42.21 | 42.76 |
| KRH10294 | Soybean | nucleus | 47.4 | 42.44 |
| KRH24840 | Soybean | nucleus | 42.86 | 42.31 |
| KRH29844 | Soybean | nucleus, plastid | 38.96 | 41.67 |
| CDX71073 | Canola | nucleus | 40.91 | 39.87 |
| AT3G46080.1 | Thale cress | nucleus | 42.21 | 39.63 |
| Bra006692.1-P | Field mustard | nucleus | 40.91 | 39.62 |
| Bra006691.1-P | Field mustard | nucleus | 40.91 | 39.62 |
| CDX88724 | Canola | nucleus | 40.91 | 39.62 |
| Solyc05g054660.1.1 | Tomato | nucleus, plastid | 42.86 | 39.52 |
| CDY09252 | Canola | nucleus | 40.26 | 39.49 |
| AT5G59820.1 | Thale cress | nucleus | 40.26 | 38.27 |
| CDY65692 | Canola | nucleus | 39.61 | 38.12 |
| AT3G46090.1 | Thale cress | nucleus | 40.91 | 37.5 |
| CDY31593 | Canola | nucleus | 38.96 | 37.5 |
| CDX80226 | Canola | nucleus | 38.96 | 37.27 |
| Bra002528.1-P | Field mustard | nucleus | 38.31 | 36.88 |
| Bra019477.1-P | Field mustard | nucleus | 40.26 | 36.47 |
| CDY30924 | Canola | nucleus | 39.61 | 35.88 |
| Solyc03g093870.1.1 | Tomato | nucleus | 39.61 | 35.06 |
| CDY58688 | Canola | nucleus | 20.13 | 34.83 |
| CDY30925 | Canola | nucleus | 37.66 | 34.32 |
| Bra019476.1-P | Field mustard | nucleus | 37.66 | 34.32 |
| CDX68366 | Canola | nucleus | 38.31 | 33.33 |
| AT3G46070.1 | Thale cress | nucleus | 34.42 | 31.18 |
| CDX99130 | Canola | nucleus | 38.31 | 30.73 |
| Bra018225.1-P | Field mustard | nucleus | 38.31 | 30.73 |
| CDX86044 | Canola | nucleus | 38.31 | 28.92 |
| Solyc11g066400.1.1 | Tomato | nucleus, plastid | 42.21 | 22.11 |
| Solyc09g008440.1.1 | Tomato | nucleus | 41.56 | 20.65 |
| Solyc06g074800.1.1 | Tomato | nucleus | 40.91 | 19.33 |
| Solyc05g055500.1.1 | Tomato | nucleus | 40.91 | 17.4 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0010200 |
| InterPro:IPR013087 | UniProt:K4DB12 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR26374 |
| PANTHER:PTHR26374:SF329 | SMART:SM00355 | SUPFAM:SSF57667 | EnsemblPlantsGene:Solyc11g073060.1 | EnsemblPlants:Solyc11g073060.1.1 | UniParc:UPI0002769FCC |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | : | : | : | : |
Description
No Description!
Coordinates
chr11:-:56172037..56172501
Molecular Weight (calculated)
17370.1 Da
IEP (calculated)
10.285
GRAVY (calculated)
-0.478
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTMKRSRED NGQVEAEAMA NCALMLLSRL NNNNDFACKT CNKRFPSFQA LGGHRTSHNK KPKLLGETNQ KSKVHKCSIC GMEFALGQAL GGHMRRHRDE
101: INKVTSHEKT IIPILHSSKR ISIFGVNLNI TPNVDDLKLW PIEEAPSPVL RIFF
101: INKVTSHEKT IIPILHSSKR ISIFGVNLNI TPNVDDLKLW PIEEAPSPVL RIFF
001: MKRDRSDYEE SMKHIDIVES LMMLSRSFVV KQIDVKQSTG SKTNHNNHFE CKTCNRKFDS FQALGGHRAS HKKPKLIVDQ EQVKHRNKEN DMHKCTICDQ
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
101: MFGTGQALGG HMRKHRTSMI TEQSIVPSVV YSRPVFNRCS SSKEILDLNL TPLENDLVLI FGKNLVPQID LKFVN
Arabidopsis Description
At3g53600 [Source:UniProtKB/TrEMBL;Acc:Q9LFG0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.