Factsheet for Solyc10g085990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02800.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G02800.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045344	Potato	plastid	99.73	99.73
Solyc09g007170.2.1	Tomato	cytosol, mitochondrion, nucleus	83.29	79.03
KRH67618	Soybean	cytosol	78.71	77.04
KRG95902	Soybean	cytosol	78.17	76.32
KRH19781	Soybean	cytosol	78.71	76.24
KRH32375	Soybean	cytosol	78.44	75.98
GSMUA_Achr6P15480_001	Banana	cytosol	77.9	74.87
VIT_08s0040g03060.t01	Wine grape	nucleus	79.25	74.24
CDY55687	Canola	plastid	74.66	73.87
AT5G02800.1	Thale cress	plastid	75.2	73.81
Bra028862.1-P	Field mustard	plastid	74.66	73.67
CDY04867	Canola	plastid	74.39	73.4
GSMUA_Achr10P...	Banana	cytosol	76.55	73.39
GSMUA_AchrUn_...	Banana	plasma membrane	77.09	60.47
GSMUA_Achr10P...	Banana	cytosol	70.62	57.58
Solyc04g082510.2.1	Tomato	plastid	57.41	57.57
Solyc06g075550.2.1	Tomato	cytosol, nucleus	63.07	56.93
Solyc05g024290.2.1	Tomato	cytosol	69.81	55.7
Solyc01g067400.2.1	Tomato	cytosol	74.93	54.4
Solyc12g094680.1.1	Tomato	cytosol	57.95	53.75
Solyc10g006340.2.1	Tomato	cytosol	58.76	53.69
Solyc12g005160.1.1	Tomato	cytosol	57.68	53.1
Solyc10g005300.2.1	Tomato	cytosol, mitochondrion	54.72	52.19
Solyc06g083500.2.1	Tomato	nucleus	59.03	50.23
Solyc11g072660.1.1	Tomato	cytosol	64.96	50.21
Solyc09g061330.1.1	Tomato	plastid	59.3	49.33
Solyc07g064340.2.1	Tomato	plasma membrane	54.18	48.55
Solyc02g094380.1.1	Tomato	cytosol	53.1	46.24
Solyc05g055860.2.1	Tomato	cytosol	50.13	38.27
Solyc04g050970.2.1	Tomato	plastid	52.29	34.58

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	MapMan:26.8.1.2.3	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
InterPro:IPR000719	UniProt:K4D433	InterPro:Kinase-like_dom_sf	PFAM:PF07714	PIRSF:PIRSF000654	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF211	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser-Thr/Tyr_kinase_cat_dom	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc10g085990.1	EnsemblPlants:Solyc10g085990.1.1
UniParc:UPI000276934B	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:64979123..64983578

Molecular Weight (calculated)

41036.5 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.346

Length

371 amino acids

Sequence
(BLAST)

001: MGWFPCSGPS KQTSKKKNSV DSGRHSTDKL KSKNSLRSKE VDKDAGSNQI AAKTFIFRDL AAATKNFRGD YLLGEGGFGR VYKGVIESNQ VVAIKQLDRN
101: GLQGNREFLV EVLMLSLLHH PNLVNLIGYC ADGDQRLLVY EYMPLGSLED HLHDPTPGKE RLDWNTRMKI AAGAAKGLEY LHSASPPVIY RDLKCSNILL
201: GEGYHAKLSD FGLAKLGPVG DNTHVSTRVM GTYGYCAPEY AMTGQLTLKS DVYSFGVVLL EIITGRKAIE SSKTGGDFNL VIWARPLFKD RRKFSQMADP
301: MLQGHYPVRG MYQALAVAAM CVQEQPNMRP VIADVVTALT YLASQKFDHE TRGGIQTSRP GPATSPRMKR W

Best Arabidopsis Sequence Match ( AT5G02800.1 )
(BLAST)

001: MGWIPCSGKS SGRNKTRRNG DHKLDRKSSD CSVSTSEKSR AKSSLSESKS KGSDHIVAQT FTFSELATAT RNFRKECLIG EGGFGRVYKG YLASTSQTAA
101: IKQLDHNGLQ GNREFLVEVL MLSLLHHPNL VNLIGYCADG DQRLLVYEYM PLGSLEDHLH DISPGKQPLD WNTRMKIAAG AAKGLEYLHD KTMPPVIYRD
201: LKCSNILLDD DYFPKLSDFG LAKLGPVGDK SHVSTRVMGT YGYCAPEYAM TGQLTLKSDV YSFGVVLLEI ITGRKAIDSS RSTGEQNLVA WARPLFKDRR
301: KFSQMADPML QGQYPPRGLY QALAVAAMCV QEQPNLRPLI ADVVTALSYL ASQKFDPLAQ PVQGSLFAPG TPPRSKRV

Arabidopsis Description

PBL7Probable serine/threonine-protein kinase PBL7 [Source:UniProtKB/Swiss-Prot;Acc:Q0WRY5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.