Factsheet for Solyc06g075550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016900	Potato	cytosol	96.11	96.34
Bra000486.1-P	Field mustard	cytosol	54.01	64.91
CDX93611	Canola	cytosol	62.29	64.16
KRH24971	Soybean	cytosol	64.72	64.1
KRG88698	Soybean	cytosol	64.23	63.46
Solyc10g085990.1.1	Tomato	plastid	56.93	63.07
Os07t0695300-01	Rice	cytosol, plastid	58.88	62.05
Bra018678.1-P	Field mustard	cytosol	62.77	61.72
Solyc11g072660.1.1	Tomato	cytosol	71.29	61.04
CDY06282	Canola	cytosol	62.53	60.9
VIT_06s0004g03670.t01	Wine grape	cytosol, plastid	63.99	60.88
CDX95117	Canola	cytosol	62.53	60.61
CDY32811	Canola	cytosol	62.04	60.57
Bra031596.1-P	Field mustard	cytosol	62.29	60.52
Bra030705.1-P	Field mustard	cytosol	61.31	60.43
TraesCS2B01G096000.1	Wheat	cytosol, plastid	58.88	59.9
TraesCS2A01G081400.1	Wheat	plastid	58.88	59.75
TraesCS2D01G079200.1	Wheat	plastid	58.88	59.75
Solyc09g007170.2.1	Tomato	cytosol, mitochondrion, nucleus	56.69	59.59
EER97804	Sorghum	cytosol	58.15	59.16
CDY22717	Canola	cytosol	62.29	57.92
AT2G28590.1	Thale cress	cytosol	58.88	57.08
CDX83297	Canola	cytosol	59.37	56.61
CDX95766	Canola	cytosol	59.12	56.51
KRH22964	Soybean	cytosol	62.29	53.89
Solyc04g082510.2.1	Tomato	plastid	47.93	53.24
KRH10353	Soybean	cytosol	62.53	52.99
HORVU2Hr1G013440.2	Barley	plastid	58.64	52.28
Solyc10g006340.2.1	Tomato	cytosol	50.12	50.74
Solyc10g005300.2.1	Tomato	cytosol, mitochondrion	47.93	50.64
Solyc12g094680.1.1	Tomato	cytosol	48.66	50.0
Solyc12g005160.1.1	Tomato	cytosol	48.18	49.13
Solyc05g024290.2.1	Tomato	cytosol	54.26	47.96
AT1G07870.2	Thale cress	cytosol	62.29	47.58
Solyc01g067400.2.1	Tomato	cytosol	58.88	47.36
Solyc07g064340.2.1	Tomato	plasma membrane	47.45	47.1
Solyc09g061330.1.1	Tomato	plastid	50.12	46.19
Solyc06g083500.2.1	Tomato	nucleus	47.93	45.18
CDY58830	Canola	nucleus	61.31	45.16
Solyc02g094380.1.1	Tomato	cytosol	43.8	42.25
Solyc05g055860.2.1	Tomato	cytosol	43.8	37.04
Solyc04g050970.2.1	Tomato	plastid	47.69	34.94

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.1.37.1	Gene3D:3.30.200.20	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
UniProt:K4C9S0	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF499	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc06g075550.2	EnsemblPlants:Solyc06g075550.2.1	UniParc:UPI0002766B7F	:

Description

No Description!

Coordinates

chr6:+:46912732..46916473

Molecular Weight (calculated)

45893.9 Da

IEP (calculated)

8.345

GRAVY (calculated)

-0.460

Length

411 amino acids

Sequence
(BLAST)

001: MGCFPCSGDG DTSVKKPEKK IFQTISNHKY KRVEQPQPKQ VVTPVASQFK VVKNEDAKVA NRSMSKKDGG YSNISPTDGK TGGAKAQRFK FDQLIAATED
101: FKEDYFLGEG GFGKVYKGHL EDTGEIVAIK QLDPNGCQGV REFVVEVQTL SKADHANLVK LIGCCAEGDQ RLLVYEYMSL GSLEDHLFDP WPNQKPLDWN
201: VRMKIAAGAA RGLEYLHDKM NPPIIYRDLK CSNILLGEGF HPKLSDFGLA KVGPSGDKTH VSTRVMGTYG YCAPDYAMTG QLTFKSDIYS FGVVLLEIIT
301: GRRAIDYTKS ATEQNLVSWA RPLFKDRKKF YKMADPALDG HYPIRSLYQA LAIAAMCVQE QPNMRPPIVD IVTALSYLAS LKYDPEIEPP IRKSYKSQSP
401: QKSIKDDDET W

Best Arabidopsis Sequence Match ( AT1G07870.2 )
(BLAST)

001: MGCFGCSKKS SKRSETNKDT VINRKIVGGT TSVAKSDKRD DQTQPSSDST KVSPYRDVNN EGGVGKEDQL SLDVKGLNLN DQVTGKKAQT FTFQELAEAT
101: GNFRSDCFLG EGGFGKVFKG TIEKLDQVVA IKQLDRNGVQ GIREFVVEVL TLSLADHPNL VKLIGFCAEG DQRLLVYEYM PQGSLEDHLH VLPSGKKPLD
201: WNTRMKIAAG AARGLEYLHD RMTPPVIYRD LKCSNILLGE DYQPKLSDFG LAKVGPSGDK THVSTRVMGT YGYCAPDYAM TGQLTFKSDI YSFGVVLLEL
301: ITGRKAIDNT KTRKDQNLVG WARPLFKDRR NFPKMVDPLL QGQYPVRGLY QALAISAMCV QEQPTMRPVV SDVVLALNFL ASSKYDPNSP SSSSGKNPSF
401: HRDRDDEEKR PHLVKETECE GRTGNTRRGI FPVSEYWIHA IPVIVFLCFF TLWIFSHSVS VMNDGEIMSI HRLEKSMAVR NESHVSLAIL ASSAVSPASS
501: ALVAVVSTNQ NLTTFHNATQ SQQNATQSVN KAKQPHAV

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HSH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.