Factsheet for VIT_06s0004g03670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g03410.t01	Wine grape	cytosol	62.04	71.28
CDX93611	Canola	cytosol	65.28	70.68
KRH24971	Soybean	cytosol	67.36	70.12
KRG88698	Soybean	cytosol	67.13	69.71
Bra030705.1-P	Field mustard	cytosol	66.67	69.06
Bra000486.1-P	Field mustard	cytosol	54.17	68.42
Bra018678.1-P	Field mustard	cytosol	66.2	68.42
CDY32811	Canola	cytosol	66.67	68.41
Os07t0695300-01	Rice	cytosol, plastid	61.34	67.95
CDX95117	Canola	cytosol	66.67	67.92
CDY06282	Canola	cytosol	65.97	67.54
Bra031596.1-P	Field mustard	cytosol	65.97	67.38
VIT_08s0040g03060.t01	Wine grape	nucleus	59.72	65.15
Solyc06g075550.2.1	Tomato	cytosol, nucleus	60.88	63.99
PGSC0003DMT400016900	Potato	cytosol	60.65	63.9
EER97804	Sorghum	cytosol	59.49	63.61
TraesCS2B01G096000.1	Wheat	cytosol, plastid	59.26	63.37
CDY22717	Canola	cytosol	64.81	63.35
TraesCS2D01G079200.1	Wheat	plastid	59.26	63.21
TraesCS2A01G081400.1	Wheat	plastid	59.26	63.21
AT2G28590.1	Thale cress	cytosol	60.88	62.03
KRH22964	Soybean	cytosol	67.59	61.47
CDX95766	Canola	cytosol	61.11	61.4
CDX83297	Canola	cytosol	60.65	60.79
KRH10353	Soybean	cytosol	67.13	59.79
VIT_19s0090g00030.t01	Wine grape	mitochondrion	48.15	59.09
VIT_10s0116g00850.t01	Wine grape	cytosol	49.31	58.68
PGSC0003DMT400065260	Potato	cytosol	62.27	58.1
VIT_03s0038g03810.t01	Wine grape	cytosol	49.07	58.08
Solyc11g072660.1.1	Tomato	cytosol	62.73	56.46
HORVU2Hr1G013440.2	Barley	plastid	59.26	55.53
VIT_18s0122g01240.t01	Wine grape	cytosol	50.46	54.36
AT1G07870.2	Thale cress	cytosol	67.36	54.09
VIT_01s0146g00250.t01	Wine grape	cytosol	56.48	52.59
CDY58830	Canola	nucleus	66.67	51.61
VIT_07s0005g06450.t01	Wine grape	plastid	50.23	50.82
VIT_19s0014g00940.t01	Wine grape	cytosol, plastid	48.84	49.3
VIT_05s0020g01770.t01	Wine grape	cytosol	60.19	49.24
VIT_14s0068g01540.t01	Wine grape	cytosol	46.99	48.1
VIT_04s0043g01030.t01	Wine grape	cytosol, plastid	46.53	43.51

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100262185	wikigene:100262185	MapMan:18.4.1.37.1	MapMan:26.8.1.2.3	Gene3D:3.30.200.20
ProteinID:CCB43628	ProteinID:CCB43628.1	UniProt:F6GTW4	EMBL:FN594951	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100262185	wikigene:LOC100262185	PFAM:PF00069	PIRSF:PIRSF000615
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF63	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC64029	UniParc:UPI00019836D1
ArrayExpress:VIT_06s0004g03670	EnsemblPlantsGene:VIT_06s0004g03670	EnsemblPlants:VIT_06s0004g03670.t01	unigene:Vvi.25233	RefSeq:XP_002284672	RefSeq:XP_002284672.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:4635369..4641314

Molecular Weight (calculated)

47900.1 Da

IEP (calculated)

9.262

GRAVY (calculated)

-0.592

Length

432 amino acids

Sequence
(BLAST)

001: MGCFRCGKSD KKLKKNSNSS SHNSNNNSKP NVQTQSSPDA LKVNPYLDVK KETDVEKQDS KEVNPSLDVK KEVSGNGLPD KNGSPDKNGL PDKNQARTFT
101: FHQLAVATDN FRSDCFLGEG GFGKVFKGYL DNPSQVVAIK QLDRNGLQGI REFFVEVLTL SSVDHPNLVK LIGYCAEGDQ RLLVYEYMPL GSLENHLHDL
201: PPGTKPLDWN SRMKIAAGAA KGLEYLHDKM YPPVIYRDLK CSNILLGEGY HPKLSDFGLA KVGPTGDKTH VSTRVMGTYG YCAPDYAMTG QLTFKSDIYS
301: FGVVLLELIT GRKAIDNSKG AREQNLVAWA RPLFKDRRKF SQMADPLLHG QYPVRGLYQA LAIAAMCVQE QPNMRPLIAD VVTALNYLAS QTYNPQIHPV
401: QSHQGSISPT TRKGSDKKSS QEMHQRKTEG EK

Best Arabidopsis Sequence Match ( AT1G07870.2 )
(BLAST)

001: MGCFGCSKKS SKRSETNKDT VINRKIVGGT TSVAKSDKRD DQTQPSSDST KVSPYRDVNN EGGVGKEDQL SLDVKGLNLN DQVTGKKAQT FTFQELAEAT
101: GNFRSDCFLG EGGFGKVFKG TIEKLDQVVA IKQLDRNGVQ GIREFVVEVL TLSLADHPNL VKLIGFCAEG DQRLLVYEYM PQGSLEDHLH VLPSGKKPLD
201: WNTRMKIAAG AARGLEYLHD RMTPPVIYRD LKCSNILLGE DYQPKLSDFG LAKVGPSGDK THVSTRVMGT YGYCAPDYAM TGQLTFKSDI YSFGVVLLEL
301: ITGRKAIDNT KTRKDQNLVG WARPLFKDRR NFPKMVDPLL QGQYPVRGLY QALAISAMCV QEQPTMRPVV SDVVLALNFL ASSKYDPNSP SSSSGKNPSF
401: HRDRDDEEKR PHLVKETECE GRTGNTRRGI FPVSEYWIHA IPVIVFLCFF TLWIFSHSVS VMNDGEIMSI HRLEKSMAVR NESHVSLAIL ASSAVSPASS
501: ALVAVVSTNQ NLTTFHNATQ SQQNATQSVN KAKQPHAV

Arabidopsis Description

Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HSH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.