Factsheet for VIT_05s0020g01770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11239	Soybean	cytosol, plastid	85.8	88.13
KRH21034	Soybean	cytosol, plastid	84.85	87.33
Solyc01g067400.2.1	Tomato	cytosol	82.58	85.32
CDX88927	Canola	cytosol	70.45	83.78
AT5G18610.2	Thale cress	plastid	80.68	83.04
CDX70830	Canola	cytosol	73.48	82.91
VIT_13s0067g03410.t01	Wine grape	cytosol	57.77	81.12
GSMUA_Achr9P17690_001	Banana	cytosol, nucleus, plastid	42.8	80.71
GSMUA_Achr8P00160_001	Banana	cytosol	63.26	79.9
CDX92596	Canola	plastid	69.89	78.01
GSMUA_Achr3P08930_001	Banana	cytosol	63.07	77.62
CDY13906	Canola	plastid	70.83	77.27
GSMUA_Achr10P...	Banana	cytosol	62.31	77.23
VIT_01s0146g00250.t01	Wine grape	cytosol	66.1	75.22
EES18122	Sorghum	plastid	67.42	75.11
Bra002172.1-P	Field mustard	plastid	78.6	75.05
VIT_08s0040g03060.t01	Wine grape	nucleus	56.25	75.0
Os01t0936100-01	Rice	plasma membrane	69.7	74.95
EES18123	Sorghum	plastid	67.23	74.89
Zm00001d010492_P010	Maize	cytosol	66.48	74.05
Os05t0372100-01	Rice	cytosol, nucleus, plastid	68.56	73.73
TraesCS3B01G506600.1	Wheat	cytosol	66.67	73.49
TraesCS1A01G236600.2	Wheat	cytosol, nucleus, plastid	67.42	72.8
TraesCS1B01G247100.1	Wheat	cytosol	64.96	72.67
TraesCS1D01G235800.1	Wheat	cytosol, nucleus, plastid	67.42	72.65
TraesCS3A01G463400.1	Wheat	cytosol	66.48	72.52
TraesCS3D01G457400.1	Wheat	cytosol	66.48	72.52
HORVU1Hr1G058100.1	Barley	cytosol, nucleus, plastid	67.23	72.45
Zm00001d011908_P001	Maize	cytosol, nucleus, plastid	67.99	72.23
HORVU3Hr1G099120.1	Barley	cytosol	66.48	72.22
GSMUA_Achr2P06850_001	Banana	cytosol	60.42	72.01
GSMUA_Achr8P21930_001	Banana	cytosol, nucleus, plastid	64.02	71.76
Zm00001d042185_P003	Maize	cytosol	67.99	71.66
Bra006469.1-P	Field mustard	cytosol	78.79	67.64
VIT_19s0090g00030.t01	Wine grape	mitochondrion	43.75	65.62
VIT_10s0116g00850.t01	Wine grape	cytosol	44.32	64.46
VIT_03s0038g03810.t01	Wine grape	cytosol	42.42	61.37
VIT_06s0004g03670.t01	Wine grape	cytosol, plastid	49.24	60.19
VIT_07s0005g06450.t01	Wine grape	plastid	47.54	58.78
VIT_19s0014g00940.t01	Wine grape	cytosol, plastid	47.35	58.41
VIT_18s0122g01240.t01	Wine grape	cytosol	44.32	58.35
VIT_14s0068g01540.t01	Wine grape	cytosol	45.45	56.87
VIT_04s0043g01030.t01	Wine grape	cytosol, plastid	45.83	52.38

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100249446	wikigene:100249446	MapMan:18.4.1.37.1	MapMan:26.8.1.2.3	Gene3D:3.30.200.20
ProteinID:CCB50339	ProteinID:CCB50339.1	UniProt:F6HDG9	EMBL:FN595749	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468	GO:GO:0007154
GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	EntrezGene:LOC100249446	wikigene:LOC100249446	PFAM:PF00069	PIRSF:PIRSF000615	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF505	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	TIGR:TC61637	UniParc:UPI00019832A1	ArrayExpress:VIT_05s0020g01770
EnsemblPlantsGene:VIT_05s0020g01770	EnsemblPlants:VIT_05s0020g01770.t01	unigene:Vvi.6370	RefSeq:XP_002275431	RefSeq:XP_002275431.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:3485813..3493754

Molecular Weight (calculated)

57856.3 Da

IEP (calculated)

9.515

GRAVY (calculated)

-0.660

Length

528 amino acids

Sequence
(BLAST)

001: MGGCFPCFGS SNKEGNGVKK DVAKKDSVKD GSSAQSHHVT RVSSDKSKSR SGSDSKKEPA VPKDGPTAHI AAQTFTFREL AAATKNFRPE SLLGEGGFGR
101: VYKGRLESTG QVVAVKQLDR NGLQGNREFL VEVLMLSLLH HPNLVNLIGY CADGDQRLLV YEFMPLGSLE DHLHDLPPDK EPLDWNTRMK IAAGAAKGLE
201: YLHDKASPPV IYRDLKSSNI LLDEGYHPKL SDFGLAKLGP VGDKTHVSTR VMGTYGYCAP EYAMTGQLTL KSDVYSFGVV FLELITGRKA IDNNRAAGEH
301: NLVAWARPLF KDRRKFPKMA DPLLQGRYPM RGLYQALAVA AMCLQEQAAT RPLIGDVVTA LTYLASQTYD PNAASAQSNR VGPSTPRSKD DRRSLPDGLD
401: SPDNPGRGGR LGSPSTHKNS PDFRRRDPLR DLSTATDLGR SEADGGSGRK WGLDELERQE SQRDIPISAG RARDTERDIP ISSGRARETP RNRDLDRERA
501: VAEAKVWGEN WREKKRANVV GSFDGTNG

Best Arabidopsis Sequence Match ( AT5G18610.1 )
(BLAST)

001: MSGCLPCFGS SAKDAASKDS VKKELSAKDG SVTQSHHISL DKSKSRRGPE QKKELTAPKE GPTAHIAAQT FTFRELAAAT KNFRPECLLG EGGFGRVYKG
101: RLETTGQIVA VKQLDRNGLQ GNREFLVEVL MLSLLHHPNL VNLIGYCADG DQRLLVYEYM PLGSLEDHLH DLPPDKEPLD WSTRMTIAAG AAKGLEYLHD
201: KANPPVIYRD LKSSNILLGD GYHPKLSDFG LAKLGPVGDK THVSTRVMGT YGYCAPEYAM TGQLTLKSDV YSFGVVFLEL ITGRKAIDNA RAPGEHNLVA
301: WARPLFKDRR KFPKMADPSL QGRYPMRGLY QALAVAAMCL QEQAATRPLI GDVVTALTYL ASQTFDPNAP SGQNSRSGSG PPFIRTRDDR RSLGDGSSLD
401: SPAETRSRLG SPATHKNSPD YRRRDMVREV NAGSEGGSET GGGSGRKWGL SDLEGQESQR GSPASVGRSS RGTPRNRDLD RERAVAEAKV WGENWRERKR
501: ATNGPGSFDS TND

Arabidopsis Description

PBL27Serine/threonine-protein kinase PBL27 [Source:UniProtKB/Swiss-Prot;Acc:Q1PDV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.