Factsheet for VIT_01s0146g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04770.t01
VIT_01s0146g00250.t01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13160.1	VIT_01s0011g04770.t01	AT1G71020.1	21798944
AT5G13160.1	VIT_01s0146g00250.t01	AT5G13160.1	24225654

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g024290.2.1	Tomato	cytosol	82.97	82.8
KRH36361	Soybean	cytosol	80.6	81.3
PGSC0003DMT400021929	Potato	cytosol	81.9	81.2
KRG93133	Soybean	cytosol	80.39	80.04
GSMUA_Achr5P25020_001	Banana	cytosol	73.28	79.81
AT5G13160.1	Thale cress	cytosol	77.8	79.17
KRH46858	Soybean	cytosol	79.53	78.68
CDX85669	Canola	cytosol	73.06	78.47
CDX91145	Canola	cytosol	73.06	78.29
Bra023393.1-P	Field mustard	cytosol	75.43	77.61
Bra008851.1-P	Field mustard	cytosol	75.65	77.14
CDX69664	Canola	cytosol	75.65	77.14
CDX97232	Canola	cytosol	75.65	77.14
Bra006184.1-P	Field mustard	cytosol	72.2	75.79
CDX78510	Canola	cytosol	71.98	75.39
GSMUA_Achr9P01200_001	Banana	cytosol	45.69	74.65
VIT_13s0067g03410.t01	Wine grape	cytosol	59.05	72.87
GSMUA_Achr9P29230_001	Banana	cytosol	67.24	72.06
Os04t0393900-01	Rice	plasma membrane	68.32	69.82
EES10653	Sorghum	cytosol	71.77	68.8
TraesCS2B01G302800.1	Wheat	cytosol, plastid	70.04	68.71
Zm00001d003925_P001	Maize	cytosol, nucleus, plastid	71.77	68.52
TraesCS2D01G284200.1	Wheat	cytosol	70.04	68.28
CDY53627	Canola	cytosol	72.2	68.09
TraesCS2A01G285700.1	Wheat	cytosol, plastid	69.83	68.07
HORVU2Hr1G070690.2	Barley	cytosol	70.04	67.85
VIT_08s0040g03060.t01	Wine grape	nucleus	57.76	67.68
GSMUA_Achr6P20850_001	Banana	cytosol	67.67	67.67
VIT_05s0020g01770.t01	Wine grape	cytosol	75.22	66.1
EES05138	Sorghum	cytosol	72.2	65.43
Zm00001d016591_P002	Maize	cytosol	71.55	65.23
Zm00001d050575_P001	Maize	cytosol	72.41	64.86
Os02t0513000-01	Rice	plasma membrane	72.63	64.07
VIT_19s0090g00030.t01	Wine grape	mitochondrion	48.49	63.92
VIT_10s0116g00850.t01	Wine grape	cytosol	49.35	63.09
VIT_03s0038g03810.t01	Wine grape	cytosol	47.84	60.82
VIT_07s0005g06450.t01	Wine grape	plastid	53.23	57.85
VIT_19s0014g00940.t01	Wine grape	cytosol, plastid	52.59	57.01
VIT_14s0068g01540.t01	Wine grape	cytosol	51.72	56.87
VIT_06s0004g03670.t01	Wine grape	cytosol, plastid	52.59	56.48
VIT_18s0122g01240.t01	Wine grape	cytosol	48.71	56.36
VIT_04s0043g01030.t01	Wine grape	cytosol, plastid	49.57	49.78

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100254113	wikigene:100254113	MapMan:18.4.1.37.1	MapMan:26.8.1.2.3	Gene3D:3.30.200.20
ProteinID:CCB60854	ProteinID:CCB60854.1	UniProt:F6I1N7	EMBL:FN596513	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004675	GO:GO:0004871	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0007154	GO:GO:0007165	GO:GO:0007166	GO:GO:0007178	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0038023
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100254113	wikigene:LOC100254113	PFAM:PF00069	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF100	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI00015CCF8D	ArrayExpress:VIT_01s0146g00250	EnsemblPlantsGene:VIT_01s0146g00250	EnsemblPlants:VIT_01s0146g00250.t01
unigene:Vvi.7120	RefSeq:XP_002265076	RefSeq:XP_002265076.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:+:22067231..22072017

Molecular Weight (calculated)

51883.3 Da

IEP (calculated)

7.636

GRAVY (calculated)

-0.648

Length

464 amino acids

Sequence
(BLAST)

001: MGCFPCFDSR EEEKLNPDKG RDDRRESPQM VASNISRLSS GADRLKARNS TGLKKESSGP KDVPDGHIAA QTFTFRELAV ATKNFQPESF IGEGGFGRVY
101: KGRLESTGQV VAVKQLDREG LQGNREFLVE VLMLSLLHHP NLVNLIGYCA DGEQRLLVYE FMPLGSLEDH LLDLPPDKEP LDWNTRMKIA AGAAKGLEYL
201: HDKASPPVIY RDFKSSNILL EEGFHPKLSD FGLAKLGPVG DKSHVSTRVM GTYGYCAPEY AMTGQLTVKS DVYSFGVVFL ELITGRKAID STLPHGEQNL
301: VTWARPLFND RRKFAKLADP RLHGRYPMRG LYQALAVASM CIQEQAATRP LIGDVVTALS YLANQSYDPN AAHGHIYRGS GDRDERRNRE ERSARVTRNE
401: DGGGSGRRWD LEGSEREDSP RETARMLNRD LDRERAVAEA KMWGENWREK RRQSAQGSFD GTNG

Best Arabidopsis Sequence Match ( AT5G13160.1 )
(BLAST)

001: MGCFSCFDSS DDEKLNPVDE SNHGQKKQSQ PTVSNNISGL PSGGEKLSSK TNGGSKRELL LPRDGLGQIA AHTFAFRELA AATMNFHPDT FLGEGGFGRV
101: YKGRLDSTGQ VVAVKQLDRN GLQGNREFLV EVLMLSLLHH PNLVNLIGYC ADGDQRLLVY EFMPLGSLED HLHDLPPDKE ALDWNMRMKI AAGAAKGLEF
201: LHDKANPPVI YRDFKSSNIL LDEGFHPKLS DFGLAKLGPT GDKSHVSTRV MGTYGYCAPE YAMTGQLTVK SDVYSFGVVF LELITGRKAI DSEMPHGEQN
301: LVAWARPLFN DRRKFIKLAD PRLKGRFPTR ALYQALAVAS MCIQEQAATR PLIADVVTAL SYLANQAYDP SKDDSRRNRD ERGARLITRN DDGGGSGSKF
401: DLEGSEKEDS PRETARILNR DINRERAVAE AKMWGESLRE KRRQSEQGTS ESNSTG

Arabidopsis Description

PBS1AvrPphB susceptible 1 [Source:UniProtKB/TrEMBL;Acc:B2BDM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.