Factsheet for PGSC0003DMT400021929

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015349
PGSC0003DMT400021929	plasma membrane
PGSC0003DMT400078473

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13160.1	PGSC0003DMT400015349	AT1G71020.1	21798944
AT5G13160.1	PGSC0003DMT400078473	AT1G71020.1	21798944
AT5G13160.1	PGSC0003DMT400021929	AT5G13160.1	24225654

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g024290.2.1	Tomato	cytosol	96.37	96.99
VIT_01s0146g00250.t01	Wine grape	cytosol	81.2	81.9
KRH36361	Soybean	cytosol	77.78	79.13
AT5G13160.1	Thale cress	cytosol	76.28	78.29
CDX85669	Canola	cytosol	72.22	78.24
CDX91145	Canola	cytosol	72.22	78.06
KRH46858	Soybean	cytosol	77.99	77.83
KRG93133	Soybean	cytosol	77.35	77.68
Bra008851.1-P	Field mustard	cytosol	75.0	77.14
CDX69664	Canola	cytosol	75.0	77.14
CDX97232	Canola	cytosol	75.0	77.14
Bra023393.1-P	Field mustard	cytosol	73.93	76.72
Bra006184.1-P	Field mustard	cytosol	72.01	76.24
CDX78510	Canola	cytosol	72.01	76.07
GSMUA_Achr5P25020_001	Banana	cytosol	69.23	76.06
GSMUA_Achr9P01200_001	Banana	cytosol	43.38	71.48
PGSC0003DMT400045344	Potato	plastid	54.49	68.73
GSMUA_Achr9P29230_001	Banana	cytosol	63.03	68.13
CDY53627	Canola	cytosol	71.37	67.89
Os04t0393900-01	Rice	plasma membrane	65.17	67.18
PGSC0003DMT400071735	Potato	cytosol, mitochondrion, nucleus	54.91	65.9
TraesCS2B01G302800.1	Wheat	cytosol, plastid	66.03	65.33
TraesCS2D01G284200.1	Wheat	cytosol	66.03	64.92
GSMUA_Achr6P20850_001	Banana	cytosol	64.32	64.87
TraesCS2A01G285700.1	Wheat	cytosol, plastid	65.81	64.71
EES10653	Sorghum	cytosol	66.88	64.67
HORVU2Hr1G070690.2	Barley	cytosol	66.03	64.51
Zm00001d003925_P001	Maize	cytosol, nucleus, plastid	66.88	64.4
EES05138	Sorghum	cytosol	69.23	63.28
Zm00001d016591_P002	Maize	cytosol	68.38	62.87
Zm00001d050575_P001	Maize	cytosol	68.8	62.16
Os02t0513000-01	Rice	plasma membrane	69.44	61.79
PGSC0003DMT400025866	Potato	cytosol	46.37	58.65
PGSC0003DMT400029366	Potato	cytosol, mitochondrion	48.5	58.51
PGSC0003DMT400037295	Potato	cytosol	49.15	58.08
PGSC0003DMT400036145	Potato	cytosol	46.79	55.58
PGSC0003DMT400051759	Potato	nucleus	51.28	54.79
PGSC0003DMT400016900	Potato	cytosol	47.22	53.9
PGSC0003DMT400045499	Potato	cytosol, plastid	50.64	53.62
PGSC0003DMT400002807	Potato	cytosol	46.58	53.43
PGSC0003DMT400065260	Potato	cytosol	49.57	50.11
PGSC0003DMT400052190	Potato	cytosol	46.58	48.55
PGSC0003DMT400060019	Potato	cytosol	45.51	42.52
PGSC0003DMT400031291	Potato	cytosol	47.22	39.46

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:102595931	MapMan:18.4.1.37.1	MapMan:26.8.1.2.3	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0002221	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006464	GO:GO:0006468
GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605
GO:GO:0009607	GO:GO:0009816	GO:GO:0009987	GO:GO:0016020	GO:GO:0016301	GO:GO:0016740
GO:GO:0019538	GO:GO:0042742	GO:GO:0045087	GO:GO:0046777	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
UniProt:M1AFW8	PFAM:PF00069	EnsemblPlantsGene:PGSC0003DMG400008506	PGSC:PGSC0003DMG400008506	EnsemblPlants:PGSC0003DMT400021929	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF100	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0002955121	RefSeq:XP_006359071.1	:	:

Description

Receptor serine-threonine protein kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400008506]

Coordinates

chr5:+:16418030..16428188

Molecular Weight (calculated)

51893.2 Da

IEP (calculated)

7.581

GRAVY (calculated)

-0.601

Length

468 amino acids

Sequence
(BLAST)

001: MGCFSCFDSK EDEKLNPQKD RDDSNRKQPH LTAPSNISRL SSGADRLKTR STNCSKREFL GIKDAPDVQI AAHTFTFREL AAATNNFKPE SFIGEGGFGR
101: VYKGQLPSGQ VVAVKQLDRN GLQGNREFLV EVLMLSLLHH PNLVSLIGYC ADGDQRLLVY EFMPLGSLED HLHDLPPDKE PLDWNTRMTI ASGAAKGLEH
201: LHDKANPPVI YRDFKSSNIL LKDNFFPKLS DFGLAKLGPT GDKSHVSTRV MGTYGYCAPE YAMTGQLTVK SDVYSFGVVF LELITGRKAI DSTKPQGEQN
301: LVAWARPLFN DRRKFAKLAD PSLQGQFPMR GLYQALAVAS MCIQEQAAGR PLIGDVVTAL SYLANQSYDP GTVPGQIHRF GADSVDRRNK DDRVGRIFRN
401: EDGAGGGSGQ KWDVDGGSEK EDSPRETARM LNRDLDRERA VAEAKMWGEN WRDKRRQNGQ GSFDGGNE

Best Arabidopsis Sequence Match ( AT5G13160.1 )
(BLAST)

001: MGCFSCFDSS DDEKLNPVDE SNHGQKKQSQ PTVSNNISGL PSGGEKLSSK TNGGSKRELL LPRDGLGQIA AHTFAFRELA AATMNFHPDT FLGEGGFGRV
101: YKGRLDSTGQ VVAVKQLDRN GLQGNREFLV EVLMLSLLHH PNLVNLIGYC ADGDQRLLVY EFMPLGSLED HLHDLPPDKE ALDWNMRMKI AAGAAKGLEF
201: LHDKANPPVI YRDFKSSNIL LDEGFHPKLS DFGLAKLGPT GDKSHVSTRV MGTYGYCAPE YAMTGQLTVK SDVYSFGVVF LELITGRKAI DSEMPHGEQN
301: LVAWARPLFN DRRKFIKLAD PRLKGRFPTR ALYQALAVAS MCIQEQAATR PLIADVVTAL SYLANQAYDP SKDDSRRNRD ERGARLITRN DDGGGSGSKF
401: DLEGSEKEDS PRETARILNR DINRERAVAE AKMWGESLRE KRRQSEQGTS ESNSTG

Arabidopsis Description

PBS1AvrPphB susceptible 1 [Source:UniProtKB/TrEMBL;Acc:B2BDM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.