Factsheet for Zm00001d003925_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000381_P001
Zm00001d003925_P001	plasma membrane
Zm00001d016591_P002	plasma membrane
Zm00001d050575_P001	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13160.1	Zm00001d000381_P001	AT1G71020.1	21798944
AT5G13160.1	Zm00001d003925_P001	AT5G13160.1	24225654
AT5G13160.1	Zm00001d016591_P002	AT5G13160.1	24225654
AT5G13160.1	Zm00001d050575_P001	AT5G13160.1	24225654

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10653	Sorghum	cytosol	95.88	96.28
TraesCS2D01G284200.1	Wheat	cytosol	82.92	84.66
TraesCS2B01G302800.1	Wheat	cytosol, plastid	82.1	84.36
HORVU2Hr1G070690.2	Barley	cytosol	83.13	84.34
TraesCS2A01G285700.1	Wheat	cytosol, plastid	82.51	84.24
Os04t0393900-01	Rice	plasma membrane	77.16	82.6
GSMUA_Achr5P25020_001	Banana	cytosol	64.61	73.71
VIT_01s0146g00250.t01	Wine grape	cytosol	68.52	71.77
CDX85669	Canola	cytosol	63.58	71.53
Zm00001d050575_P001	Maize	cytosol	76.13	71.43
CDX91145	Canola	cytosol	63.58	71.36
Zm00001d016591_P002	Maize	cytosol	74.28	70.92
AT5G13160.1	Thale cress	cytosol	65.84	70.18
KRH36361	Soybean	cytosol	66.26	70.0
Bra023393.1-P	Field mustard	cytosol	64.81	69.84
KRH46858	Soybean	cytosol	66.87	69.3
CDX97232	Canola	cytosol	64.61	69.01
Bra008851.1-P	Field mustard	cytosol	64.61	69.01
CDX69664	Canola	cytosol	64.61	69.01
KRG93133	Soybean	cytosol	66.05	68.88
Solyc05g024290.2.1	Tomato	cytosol	65.23	68.17
Bra006184.1-P	Field mustard	cytosol	61.52	67.65
CDX78510	Canola	cytosol	61.32	67.27
PGSC0003DMT400021929	Potato	cytosol	64.4	66.88
CDY53627	Canola	cytosol	62.55	61.79
Zm00001d010492_P010	Maize	cytosol	60.08	61.6
Zm00001d011908_P001	Maize	cytosol, nucleus, plastid	62.76	61.37
Zm00001d042185_P003	Maize	cytosol	62.35	60.48
Zm00001d022492_P002	Maize	plastid	55.97	58.75
Zm00001d040303_P001	Maize	plasma membrane	50.0	52.48
Zm00001d027508_P002	Maize	cytosol	40.53	52.39
Zm00001d048341_P001	Maize	cytosol	39.71	51.6
Zm00001d016176_P001	Maize	cytosol	41.36	50.76
Zm00001d043227_P002	Maize	mitochondrion	44.65	49.66
Zm00001d028701_P001	Maize	cytosol	38.48	47.1
Zm00001d012600_P001	Maize	plastid	44.65	44.93
Zm00001d010687_P004	Maize	mitochondrion, plastid	46.71	44.86
Zm00001d038394_P002	Maize	cytosol	39.09	44.6
Zm00001d041938_P001	Maize	plastid	42.18	42.98
Zm00001d010548_P001	Maize	mitochondrion	38.68	40.6
Zm00001d019727_P001	Maize	plastid	43.0	35.36

Protein Annotations

Gene3D:1.10.510.10	EntrezGene:100281460	MapMan:18.4.1.37.1	MapMan:26.8.1.2.3	Gene3D:3.30.200.20	UniProt:B6SVK8
EMBL:BT055311	EMBL:BT085712	EMBL:EU956773	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
GO:GO:0019538	InterPro:IPR000719	InterPro:Kinase-like_dom_sf	ProteinID:ONM17982.1	PFAM:PF00069	PIRSF:PIRSF000615
ScanProsite:PS00107	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR27001	PANTHER:PTHR27001:SF287	InterPro:Prot_kinase_dom
InterPro:Protein_kinase_ATP_BS	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000182B7EA	EnsemblPlantsGene:Zm00001d003925	EnsemblPlants:Zm00001d003925_P001
EnsemblPlants:Zm00001d003925_T001	SEG:seg	:	:	:	:

Description

Serine/threonine-protein kinase PBS1

Coordinates

chr2:-:68587601..68592566

Molecular Weight (calculated)

52103.6 Da

IEP (calculated)

9.309

GRAVY (calculated)

-0.509

Length

486 amino acids

Sequence
(BLAST)

001: MGCFPCFGST REEELKYYGS KGPGGGNGGG GRATASSSSS AAAGGGGGRV EEAVVAPPRA QRGPAGADKT RAKGNAGSKK ELSVLRDASG NVISAQTFTF
101: RQLAAATKNF RDECFIGEGG FGRVYKGRLD MGQVVAIKQL NRDGNQGNKE FLVEVLMLSL LHHQNLVNLV GYCADGDQRL LVYEYMPLGS LEDHLHDLPP
201: DKEPLDWNTR MKIAAGAAKG LEYLHDKAQP PVIYRDFKSS NILLGEGFHP KLSDFGLAKL GPVGDKSHVS TRVMGTYGYC APEYAMTGQL TVKSDVYSFG
301: VVLLELITGR KAIDSTRPAS EQNLVSWARP LFNDRRKLPK MADPGLEGQF PTRGLYQALA VASMCIQSEA ASRPLIADVV TALSYLANQI YDPSLAHASK
401: KAGGSDQRNR VGDSGRALSK NDDAGSSGHR SPSKDRADSP REQFPGAANR GQDRERMVAE AKMWGENWRE KRRAAQGSLD SPTGGG

Best Arabidopsis Sequence Match ( AT5G13160.1 )
(BLAST)

001: MGCFSCFDSS DDEKLNPVDE SNHGQKKQSQ PTVSNNISGL PSGGEKLSSK TNGGSKRELL LPRDGLGQIA AHTFAFRELA AATMNFHPDT FLGEGGFGRV
101: YKGRLDSTGQ VVAVKQLDRN GLQGNREFLV EVLMLSLLHH PNLVNLIGYC ADGDQRLLVY EFMPLGSLED HLHDLPPDKE ALDWNMRMKI AAGAAKGLEF
201: LHDKANPPVI YRDFKSSNIL LDEGFHPKLS DFGLAKLGPT GDKSHVSTRV MGTYGYCAPE YAMTGQLTVK SDVYSFGVVF LELITGRKAI DSEMPHGEQN
301: LVAWARPLFN DRRKFIKLAD PRLKGRFPTR ALYQALAVAS MCIQEQAATR PLIADVVTAL SYLANQAYDP SKDDSRRNRD ERGARLITRN DDGGGSGSKF
401: DLEGSEKEDS PRETARILNR DINRERAVAE AKMWGESLRE KRRQSEQGTS ESNSTG

Arabidopsis Description

PBS1AvrPphB susceptible 1 [Source:UniProtKB/TrEMBL;Acc:B2BDM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.