Factsheet for Zm00001d000381_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013859_P002
Zm00001d032464_P008

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G71020.1	Zm00001d013859_P002	AT4G39050.1	21798944
AT1G71020.1	Zm00001d032464_P008	AT4G39050.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07310	Sorghum	cytosol	91.85	91.85
Os02t0732200-01	Rice	cytosol	81.35	81.48
TraesCS6A01G293600.1	Wheat	cytosol	79.78	79.41
TraesCS6B01G324000.1	Wheat	cytosol	79.94	79.32
TraesCS6D01G274500.1	Wheat	cytosol	79.62	79.25
HORVU6Hr1G073280.1	Barley	cytosol	79.31	63.01
VIT_01s0011g04770.t01	Wine grape	cytosol	52.51	52.43
KRG89279	Soybean	cytosol	53.29	52.23
Bra012355.1-P	Field mustard	plasma membrane	47.81	51.87
PGSC0003DMT400015349	Potato	cytosol	52.51	51.78
CDY21412	Canola	cytosol, endoplasmic reticulum	49.22	51.64
CDY04746	Canola	cytosol, endoplasmic reticulum	49.22	51.56
Bra024559.1-P	Field mustard	cytosol, plasma membrane	49.22	51.56
CDY25764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.49	51.53
KRH50347	Soybean	nucleus	52.82	51.53
Solyc04g007640.2.1	Tomato	cytosol	52.04	51.31
CDY12497	Canola	cytosol	47.96	51.26
AT1G71020.1	Thale cress	cytosol	50.31	51.11
CDX96295	Canola	cytosol, plasma membrane	48.75	50.49
Bra016165.1-P	Field mustard	cytosol, plasma membrane	48.75	50.49
AT1G23030.1	Thale cress	cytosol	48.12	50.16
CDX72769	Canola	cytosol	47.49	49.51
GSMUA_Achr9P15600_001	Banana	cytosol	51.88	48.96
PGSC0003DMT400078473	Potato	cytosol	49.69	48.77
Solyc05g008230.2.1	Tomato	cytosol	48.9	48.0
CDY04747	Canola	cytosol, golgi	31.82	46.03
Zm00001d045632_P004	Maize	cytosol, mitochondrion	39.81	40.32
Zm00001d030732_P001	Maize	cytosol	40.13	38.5
Zm00001d041548_P002	Maize	cytosol	39.81	37.8
Zm00001d028623_P001	Maize	cytosol	40.91	35.95
Zm00001d031263_P001	Maize	cytosol	35.89	35.5
Zm00001d021978_P001	Maize	cytosol	19.44	34.25
Zm00001d014845_P001	Maize	cytosol	33.86	33.7
Zm00001d016501_P001	Maize	cytosol	24.29	33.33
Zm00001d006726_P001	Maize	cytosol	18.65	33.06
Zm00001d006705_P001	Maize	plastid	20.69	28.45
Zm00001d021951_P001	Maize	plastid	20.69	28.39
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	28.06	26.72
Zm00001d053544_P001	Maize	mitochondrion, plastid	28.68	25.96
Zm00001d043043_P001	Maize	cytosol	26.33	25.34
Zm00001d012494_P001	Maize	cytosol	26.33	25.34
Zm00001d016225_P001	Maize	plastid	28.84	25.24
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	24.76	22.77
Zm00001d020332_P001	Maize	cytosol	24.76	22.64
Zm00001d035040_P007	Maize	mitochondrion	30.88	22.59
Zm00001d003967_P001	Maize	plastid	15.67	22.22
Zm00001d049708_P007	Maize	cytosol	29.94	21.66
Zm00001d042608_P002	Maize	cytosol	28.37	19.57

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100193248	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	UniProt:A0A1X7YII5	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF52	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00065E9E2F
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d000381	EnsemblPlants:Zm00001d000381_P001	EnsemblPlants:Zm00001d000381_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Putative ARM repeat-containing protein containing family protein

Coordinates

chrB73V4_ctg24:-:21822..27498

Molecular Weight (calculated)

68728.5 Da

IEP (calculated)

6.110

GRAVY (calculated)

-0.114

Length

638 amino acids

Sequence
(BLAST)

001: MAAAAAAEIV REIAAVGAAD LAAAADPLRA DCLRLARKVS LLSHLVAEVA DAGAGAGAGD AAAEAWLRDL VRALEAARRF VALGRTPAAA GASDQDAICK
101: NTGLQFKYVT WQLQAALANL PHSCFEISDE VQEEVDLVRA QLRREMEKNG GLDVTVFMKV HDILAQIDNA APQSQQPHQQ PEQPQMEKFS NDDLELRNVV
201: LLVSEISGLS KPDMSKIVSD LIQGLENVET PESPKPDNVD RQPPSDETKG SSEEVKKSDS VAIPEDFRCP ISLELMRDPV IVSTGQTYER AFIQRWIDCG
301: NRTCPKTQQK LQNLSLTPNY VLRSLILQWC EEKGMEPPSR SKSDGSPLEV AGNRLAIEAL VRNLSSSSLD DRKSAAAEIR SLAKKSTDNR ILLAESSAIP
401: ALVKLLSSKD PKTQEHAVTA LLNLSIYDQN KELVVVAGAI VPITQVLRTG SMEARENAAA AIFSLSLMDD NKIMIGSTPG AIEALVELLQ SGSSRGKKDA
501: ATALFNLCIY QANKVRAVRA GILVPLIRML QDSSRSGAVD EALTILSVLA SHHECKTAIS KAHAIPFLID LLRSGQARNR ENAAAIILAL CKRDAENLAC
601: VGRLGAQIPL AELAKTGTDR AKRKATSLLE HLSKLQVL

Best Arabidopsis Sequence Match ( AT1G71020.1 )
(BLAST)

001: MAGGAITPDS LIGLIAEINE IPGNFGLFKK DCSDLARRVG LLTHLIEEIR DSSPPSESDA SSSLNSHECD WWSDLVVGLQ AAKRLLSSAT SFQARESSDG
101: AAKRISFQFQ CVTWKLEKAL GDLTYDRYDI SDEVREQVEL ARLQLRRAMQ RYGSLNSKKF SSGLSEPMEK DASSNRKVIE KLESIPETVH SLSDEKKFES
201: PPPWKSSSVS LAFFLSKDGD DERLEKAVTE NSDDSQKSDN LTIPEDFLCP ISLELMKDPA IVSTGQTYER SFIQRWIDCG NLSCPKTQQK LENFTLTPNY
301: VLRSLISQWC TKHNIEQPGG YMNGRTKNSD GSFRDLSGDM SAIRALVCKL SSQSIEDRRT AVSEIRSLSK RSTDNRILIA EAGAIPVLVK LLTSDGDTET
401: QENAVTCILN LSIYEHNKEL IMLAGAVTSI VLVLRAGSME ARENAAATLF SLSLADENKI IIGASGAIMA LVDLLQYGSV RGKKDAATAL FNLCIYQGNK
501: GRAVRAGIVK PLVKMLTDSS SERMADEALT ILSVLASNQV AKTAILRANA IPPLIDCLQK DQPRNRENAA AILLCLCKRD TEKLISIGRL GAVVPLMELS
601: RDGTERAKRK ANSLLELLRK SSRKLGSL

Arabidopsis Description

PUB10RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WJE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.