Factsheet for Zm00001d053544_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d028948_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d043144_P001
Zm00001d047597_P001
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29340.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT1G29340.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT1G29340.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT1G29340.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT1G29340.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT1G29340.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT1G29340.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT1G29340.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT1G29340.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT1G29340.1	Zm00001d052415_P001	AT2G41100.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04812	Sorghum	plastid	94.04	90.95
Zm00001d016225_P001	Maize	plastid	93.76	90.67
TraesCS6B01G222200.1	Wheat	cytosol	48.37	81.38
TraesCS6D01G180400.1	Wheat	plastid	81.7	79.45
Os02t0234300-01	Rice	cytosol	65.39	79.35
TraesCS6A01G190700.1	Wheat	plastid	81.56	79.31
HORVU6Hr1G041430.8	Barley	mitochondrion	81.42	69.66
GSMUA_Achr2P15530_001	Banana	mitochondrion	48.51	51.82
GSMUA_Achr7P09440_001	Banana	mitochondrion	46.24	51.1
GSMUA_Achr9P28820_001	Banana	mitochondrion	42.84	50.42
GSMUA_Achr10P...	Banana	mitochondrion	31.06	48.45
CDX90186	Canola	mitochondrion	46.81	46.28
CDY43332	Canola	mitochondrion	46.95	46.04
KRH11061	Soybean	mitochondrion, plastid	46.67	45.95
Bra010834.1-P	Field mustard	mitochondrion	46.67	45.76
KRH21208	Soybean	mitochondrion	46.38	45.67
Bra032309.1-P	Field mustard	plastid	45.25	45.31
KRH42917	Soybean	mitochondrion	45.82	45.17
CDY48332	Canola	mitochondrion, plastid	45.11	45.17
AT1G29340.1	Thale cress	plastid	46.52	44.99
KRH59027	Soybean	mitochondrion	45.53	44.9
CDX94661	Canola	plastid	45.11	44.73
VIT_10s0003g01730.t01	Wine grape	mitochondrion	45.82	44.49
CDX99816	Canola	plastid	45.53	44.34
Solyc02g072080.1.1	Tomato	cytosol, mitochondrion	45.39	44.2
PGSC0003DMT400073254	Potato	cytosol	45.25	44.06
Bra021899.1-P	Field mustard	plastid	37.73	40.24
CDY43686	Canola	plastid	37.59	40.09
CDY37666	Canola	cytosol, plastid	37.59	40.09
Zm00001d038471_P001	Maize	cytosol, plasma membrane, plastid	34.18	35.97
Zm00001d012494_P001	Maize	cytosol	33.05	35.14
Zm00001d043043_P001	Maize	cytosol	32.62	34.69
Zm00001d045632_P004	Maize	cytosol, mitochondrion	27.8	31.11
Zm00001d050308_P001	Maize	mitochondrion, plasma membrane	28.94	29.39
Zm00001d016501_P001	Maize	cytosol	19.29	29.25
Zm00001d041548_P002	Maize	cytosol	27.52	28.87
Zm00001d000381_P001	Maize	cytosol	25.96	28.68
Zm00001d030732_P001	Maize	cytosol	26.52	28.12
Zm00001d014845_P001	Maize	cytosol	25.39	27.93
Zm00001d031263_P001	Maize	cytosol	25.53	27.91
Zm00001d020332_P001	Maize	cytosol	27.38	27.65
Zm00001d021978_P001	Maize	cytosol	13.62	26.52
Zm00001d028623_P001	Maize	cytosol	27.23	26.45
Zm00001d006726_P001	Maize	cytosol	13.48	26.39
Zm00001d021951_P001	Maize	plastid	14.89	22.58
Zm00001d006705_P001	Maize	plastid	14.47	21.98
Zm00001d035040_P007	Maize	mitochondrion	23.26	18.81
Zm00001d049708_P007	Maize	cytosol	22.84	18.25
Zm00001d003967_P001	Maize	plastid	11.21	17.56
Zm00001d042608_P002	Maize	cytosol	22.13	16.86

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1D6QPZ2	ProteinID:AQK59600.1	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000225	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF00514	PFAM:PF04564	PFscan:PS50176	PFscan:PS51698	PANTHER:PTHR23315
PANTHER:PTHR23315:SF76	SMART:SM00185	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0008430BAE
InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d053544	EnsemblPlants:Zm00001d053544_P001	EnsemblPlants:Zm00001d053544_T001	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

U-box domain-containing protein 17

Coordinates

chr4:+:233597108..233599306

Molecular Weight (calculated)

76261.9 Da

IEP (calculated)

8.804

GRAVY (calculated)

0.097

Length

705 amino acids

Sequence
(BLAST)

001: MAAQASSPIE FLLRRPLPRQ RRRLPLAGAF FAPTGLSGAP LLRALASLAA DLLGTPPPPS QRRNLDALMR RLALLSALLD SLLLLLADEG EAAFSDAANL
101: CFRELYVVLF RADLLVSYVA SAARAWALLR APQLAASFRD LDAELAVVLD VLPAASLRLS LDAAQYLDLL RARCRRRAPA HYHDPAEAAL GDLLLAALRH
201: FEVGQPPDPS MLRSLLLQIG ISDAASCRSE IEYLEEQILS QEEDADLPLI GGVVALLRYC LFSLFDPSNT KTLRVWLSAG NRQRLLSWSC SDDSSFSVPK
301: EFSCPISLDL MRDPVVVSTG QTYDRTSIIQ WIEEGHSTCP NSGQALADNR LVPNRALRSL ISQCKAAIEA NKATARILFR MLMEGSDSAK PIAAREIRLL
401: AKTGKQNRAF IAELGAIPLL CKLLLSSDWM AQENTVTALL NLSIYEPNKA RIMEQADCLH LIVSVLKNGR TTEAKENAAA TLFSLSVVHD YKKKIMNEPG
501: AVEELASMLT KGTPRGKKDA VMALFNLSTH PESSGRMLES SAVLALIESL RNDTVSEEAA GALALLMKQP TIVHLVGSSE TVITSLVGLM RRGTPKCKEN
601: AVSALYEICR RGGSTLAQRV ARIPGLNTVI QNVTLTGTKR AKKKASLIVK MCQRSQMPSA LAAAPLGSTL TVVDHSLVGN GTLRRAASFG SEELSNPVSI
701: SVPVP

Best Arabidopsis Sequence Match ( AT1G29340.1 )
(BLAST)

001: MASAAIFSSL RRRRSPSLEA FLAPVDLSGV ALVQTLASIS SEVVSCFTSV RFSFQRKNAR SLIRKIEIFV VLFEFLVDSN WGSTTTRTRA RRRSKSSVSE
101: STALLCLKEL YLLLYRSKIL VDYCAQSSKL WLLLQNPSIS GYFHDLNQEI STLLDVLPVN DLGLSDDIRE QIELLQRQSR KARLYIDKND ESLRESFYSF
201: LDGFENGKIP SSVDLRMFFV EKLGIRDSKS CRSEIEFLEE QIVNHDGDLE PTGSVINGFV AITRYCRFLL FGFEEDGMEW WIENNPKKPR KGFVAQEIGD
301: TFITVPKDFV CPISLDLMTD PVIISTGQTY DRNSIARWIE EGHCTCPKTG QMLMDSRIVP NRALKNLIVQ WCTASGISYE SEFTDSPNES FASALPTKAA
401: VEANKATVSI LIKYLADGSQ AAQTVAAREI RLLAKTGKEN RAYIAEAGAI PHLCRLLTSE NAIAQENSVT AMLNLSIYEK NKSRIMEEGD CLESIVSVLV
501: SGLTVEAQEN AAATLFSLSA VHEYKKRIAI VDQCVEALAL LLQNGTPRGK KDAVTALYNL STHPDNCSRM IEGGGVSSLV GALKNEGVAE EAAGALALLV
601: RQSLGAEAIG KEDSAVAGLM GMMRCGTPRG KENAVAALLE LCRSGGAAVA EKVLRAPAIA GLLQTLLFTG TKRARRKAAS LARVFQRREN AAMRSGVYGF
701: VGNTNGNRDG GFTTDVSVPI SISISVPVL

Arabidopsis Description

PUB17RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178WA68]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.